RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 LCE3AQ5TA76 89 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 SLC25A47Q6Q0C1 308 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 FIP1L1Q6UN15 594 aaKnown RBP1.81□□□□□ -2.12
VPS13A-206ENST00000376646 CPEB2Q7Z5Q1 589 aaKnown RBP1.81□□□□□ -2.12
VPS13A-206ENST00000376646 C11orf53Q8IXP5 236 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 RCOR2Q8IZ40 523 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 SFRP1Q8N474 314 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 NIPA2Q8N8Q9 360 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 GBP7Q8N8V2 638 aaPredicted RBP1.81□□□□□ -2.12
VPS13A-206ENST00000376646 PRSS33Q8NF86 280 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 OR4C15Q8NGM1 316 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 C11orf45Q8TAV5 145 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 ST7LQ8TDW4 575 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 ATP8B4Q8TF62 1192 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 UBE2Q2Q8WVN8 375 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 GTF3AQ92664 365 aaKnown RBP1.81□□□□□ -2.12
VPS13A-206ENST00000376646 SNX21Q969T3 373 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 AP2M1Q96CW1 435 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 CABS1Q96KC9 395 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 BTBD9Q96Q07 612 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 PANX3Q96QZ0 392 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 CDCA3Q99618 268 aaPredicted RBP1.81□□□□□ -2.12
VPS13A-206ENST00000376646 ALKBH7Q9BT30 221 aaPredicted RBP1.81□□□□□ -2.12
VPS13A-206ENST00000376646 PI4K2AQ9BTU6 479 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 MTMR12Q9C0I1 747 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 FAM49AQ9H0Q0 323 aaPredicted RBP1.81□□□□□ -2.12
VPS13A-206ENST00000376646 THAP2Q9H0W7 228 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 TMOD3Q9NYL9 352 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 OR6C2Q9NZP2 312 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 MUTYHQ9UIF7 546 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 TP53TG3Q9ULZ0 132 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 PCDHGA1Q9Y5H4 931 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 ARID2Q68CP9 1835 aa1.81□□□□□ -2.12
VPS13A-206ENST00000376646 TRBV4-1A0A0J9YWV2 114 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 ILVBLA1L0T0 632 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 C15orf61A6NNL5 157 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 C2CD4DB7Z1M9 353 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 NPIPA3F8WFD2 350 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 ACSL4O60488 711 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 KERAO60938 352 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 ATP9AO75110 1047 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 AKAP3O75969 853 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 GLCEO94923 617 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 PRKACGP22612 351 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 IER3P46695 156 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 LIMK2P53671 638 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 MYL7Q01449 175 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 ELAVL2Q12926 359 aaKnown RBP1.8□□□□□ -2.12
VPS13A-206ENST00000376646 PDLIM3Q53GG5 364 aaPredicted RBP1.8□□□□□ -2.12
VPS13A-206ENST00000376646 ZNF789Q5FWF6 425 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 WLSQ5T9L3 541 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 PM20D1Q6GTS8 502 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 SIGLEC15Q6ZMC9 328 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 GPR141Q7Z602 305 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 C5orf24Q7Z6I8 188 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 HPS6Q86YV9 775 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 GPATCH11Q8N954 259 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 SLC37A3Q8NCC5 494 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 GPRC5AQ8NFJ5 357 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 OR2L2Q8NH16 312 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 OR1L3Q8NH93 324 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 APOBEC4Q8WW27 367 aaKnown RBP1.8□□□□□ -2.12
VPS13A-206ENST00000376646 CKAP2Q8WWK9 683 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 SNRNP40Q96DI7 357 aaKnown RBP1.8□□□□□ -2.12
VPS13A-206ENST00000376646 NXPE2Q96DL1 559 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 CDKN2AIPNLQ96HQ2 116 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 C10orf90Q96M02 699 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 PRICKLE1Q96MT3 831 aaPredicted RBP1.8□□□□□ -2.12
VPS13A-206ENST00000376646 ACAT2Q9BWD1 397 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 IDI2Q9BXS1 227 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 OSBPL8Q9BZF1 889 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 SLC39A8Q9C0K1 460 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 C10orf88Q9H8K7 445 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 MAN2C1Q9NTJ4 1040 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 PDRG1Q9NUG6 133 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 SLC12A6Q9UHW9 1150 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 MAN1B1Q9UKM7 699 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 GRID1Q9ULK0 1009 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 STX8Q9UNK0 236 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 AGTPBP1Q9UPW5 1226 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 ITM2BQ9Y287 266 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 KIAA1217Q5T5P2 1943 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 MYH14Q7Z406 1995 aaKnown RBP1.8□□□□□ -2.12
VPS13A-206ENST00000376646 IL16Q14005 1332 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 PRRC2AP48634 2157 aaKnown RBP1.8□□□□□ -2.12
VPS13A-206ENST00000376646 IGHV3OR16-10A0A075B7F0 116 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 A0A0B4J203 849 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 MTMR11A4FU01 709 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 ANKDD1BA6NHY2 528 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 KPNA7A9QM74 516 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 RTN2O75298 545 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 RAD51DO75771 328 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 SBK2P0C263 348 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 CD59P13987 128 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 VCLP18206 1134 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 ATP6V1E1P36543 226 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 SERPINH1P50454 418 aaKnown RBP1.8□□□□□ -2.12
VPS13A-206ENST00000376646 CLDN17P56750 224 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 FKBP1BP68106 108 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 CETN1Q12798 172 aa1.8□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms