RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 OR5H15A6NDH6 313 aa20.4■□□□□ 0.86
CCDC28B-201ENST00000373602 C4orf51C9J302 202 aa20.4■□□□□ 0.86
CCDC28B-201ENST00000373602 B4GALT2O60909 372 aa20.4■□□□□ 0.86
CCDC28B-201ENST00000373602 OR4D2P58180 307 aa20.4■□□□□ 0.86
CCDC28B-201ENST00000373602 SLBPQ14493 270 aaKnown RBP eCLIP20.4■□□□□ 0.86
CCDC28B-201ENST00000373602 TOR1AIP1Q5JTV8 583 aa20.4■□□□□ 0.86
CCDC28B-201ENST00000373602 ZNF324BQ6AW86 544 aaPredicted RBP20.4■□□□□ 0.86
CCDC28B-201ENST00000373602 SULT1C3Q6IMI6 304 aa20.4■□□□□ 0.86
CCDC28B-201ENST00000373602 TMIGD1Q6UXZ0 262 aa20.4■□□□□ 0.86
CCDC28B-201ENST00000373602 QSOX2Q6ZRP7 698 aa20.4■□□□□ 0.86
CCDC28B-201ENST00000373602 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP20.4■□□□□ 0.86
CCDC28B-201ENST00000373602 PPM1NQ8N819 430 aa20.4■□□□□ 0.86
CCDC28B-201ENST00000373602 TTLQ8NG68 377 aa20.4■□□□□ 0.86
CCDC28B-201ENST00000373602 KIAA1191Q96A73 305 aa20.4■□□□□ 0.86
CCDC28B-201ENST00000373602 MAGEB10Q96LZ2 347 aaPredicted RBP20.4■□□□□ 0.86
CCDC28B-201ENST00000373602 TAAR6Q96RI8 345 aa20.4■□□□□ 0.86
CCDC28B-201ENST00000373602 PITHD1Q9GZP4 211 aaPredicted RBP20.4■□□□□ 0.86
CCDC28B-201ENST00000373602 NT5DC2Q9H857 520 aa20.4■□□□□ 0.86
CCDC28B-201ENST00000373602 CNOT10Q9H9A5 744 aaKnown RBP20.4■□□□□ 0.86
CCDC28B-201ENST00000373602 KCNK13Q9HB14 408 aa20.4■□□□□ 0.86
CCDC28B-201ENST00000373602 OLAHQ9NV23 265 aa20.4■□□□□ 0.86
CCDC28B-201ENST00000373602 DNAJC11Q9NVH1 559 aa20.4■□□□□ 0.86
CCDC28B-201ENST00000373602 FAM155BO75949 473 aa20.39■□□□□ 0.85
CCDC28B-201ENST00000373602 LDLRP01130 860 aa20.39■□□□□ 0.85
CCDC28B-201ENST00000373602 RNH1P13489 461 aaKnown RBP20.39■□□□□ 0.85
CCDC28B-201ENST00000373602 GSTM2P28161 218 aa20.39■□□□□ 0.85
CCDC28B-201ENST00000373602 STX2P32856 288 aa20.39■□□□□ 0.85
CCDC28B-201ENST00000373602 STXBP1P61764 594 aaKnown RBP20.39■□□□□ 0.85
CCDC28B-201ENST00000373602 GUCY2DQ02846 1103 aa20.39■□□□□ 0.85
CCDC28B-201ENST00000373602 ACER2Q5QJU3 275 aa20.39■□□□□ 0.85
CCDC28B-201ENST00000373602 KRT78Q8N1N4 520 aa20.39■□□□□ 0.85
CCDC28B-201ENST00000373602 PDPRQ8NCN5 879 aa20.39■□□□□ 0.85
CCDC28B-201ENST00000373602 FBF1Q8TES7 1133 aa20.39■□□□□ 0.85
CCDC28B-201ENST00000373602 SEC16BQ96JE7 1060 aa20.39■□□□□ 0.85
CCDC28B-201ENST00000373602 C5orf34Q96MH7 638 aa20.39■□□□□ 0.85
CCDC28B-201ENST00000373602 PTCHD1Q96NR3 888 aa20.39■□□□□ 0.85
CCDC28B-201ENST00000373602 EHD1Q9H4M9 534 aa20.39■□□□□ 0.85
CCDC28B-201ENST00000373602 PRMT3O60678 531 aa20.38■□□□□ 0.85
CCDC28B-201ENST00000373602 PRAMEF4O60810 478 aa20.38■□□□□ 0.85
CCDC28B-201ENST00000373602 PRAMEF2O60811 474 aa20.38■□□□□ 0.85
CCDC28B-201ENST00000373602 STK16O75716 305 aa20.38■□□□□ 0.85
CCDC28B-201ENST00000373602 MYBL2P10244 700 aa20.38■□□□□ 0.85
CCDC28B-201ENST00000373602 HSPA7P48741 367 aa20.38■□□□□ 0.85
CCDC28B-201ENST00000373602 SLC26A5P58743 744 aa20.38■□□□□ 0.85
CCDC28B-201ENST00000373602 BTG2P78543 158 aa20.38■□□□□ 0.85
CCDC28B-201ENST00000373602 CKAP4Q07065 602 aaKnown RBP20.38■□□□□ 0.85
CCDC28B-201ENST00000373602 NAB1Q13506 487 aa20.38■□□□□ 0.85
CCDC28B-201ENST00000373602 FBXO48Q5FWF7 155 aa20.38■□□□□ 0.85
CCDC28B-201ENST00000373602 PRAMEF9Q5VWM5 478 aa20.38■□□□□ 0.85
CCDC28B-201ENST00000373602 FCRLBQ6BAA4 426 aa20.38■□□□□ 0.85
CCDC28B-201ENST00000373602 BEST3Q8N1M1 668 aa20.38■□□□□ 0.85
CCDC28B-201ENST00000373602 CA13Q8N1Q1 262 aa20.38■□□□□ 0.85
CCDC28B-201ENST00000373602 SUN3Q8TAQ9 357 aa20.38■□□□□ 0.85
CCDC28B-201ENST00000373602 GAL3ST3Q96A11 431 aa20.38■□□□□ 0.85
CCDC28B-201ENST00000373602 ESAMQ96AP7 390 aa20.38■□□□□ 0.85
CCDC28B-201ENST00000373602 NPAS2Q99743 824 aa20.38■□□□□ 0.85
CCDC28B-201ENST00000373602 CD274Q9NZQ7 290 aa20.38■□□□□ 0.85
CCDC28B-201ENST00000373602 PTBP2Q9UKA9 531 aaKnown RBP20.38■□□□□ 0.85
CCDC28B-201ENST00000373602 LRIT2A6NDA9 550 aa20.37■□□□□ 0.85
CCDC28B-201ENST00000373602 PSMD12O00232 456 aaPredicted RBP20.37■□□□□ 0.85
CCDC28B-201ENST00000373602 CLGNO14967 610 aa20.37■□□□□ 0.85
CCDC28B-201ENST00000373602 CLEC3AO75596 197 aa20.37■□□□□ 0.85
CCDC28B-201ENST00000373602 SLC35E2BP0CK96 405 aa20.37■□□□□ 0.85
CCDC28B-201ENST00000373602 GMPRP36959 345 aa20.37■□□□□ 0.85
CCDC28B-201ENST00000373602 KCNC1P48547 511 aa20.37■□□□□ 0.85
CCDC28B-201ENST00000373602 TDGF1P3P51864 188 aa20.37■□□□□ 0.85
CCDC28B-201ENST00000373602 MEP1AQ16819 746 aa20.37■□□□□ 0.85
CCDC28B-201ENST00000373602 CMC1Q7Z7K0 106 aa20.37■□□□□ 0.85
CCDC28B-201ENST00000373602 CRLF3Q8IUI8 442 aa20.37■□□□□ 0.85
CCDC28B-201ENST00000373602 NR4A3Q92570 626 aa20.37■□□□□ 0.85
CCDC28B-201ENST00000373602 MS4A6EQ96DS6 147 aa20.37■□□□□ 0.85
CCDC28B-201ENST00000373602 WDR34Q96EX3 536 aa20.37■□□□□ 0.85
CCDC28B-201ENST00000373602 PRDM9Q9NQV7 894 aa20.37■□□□□ 0.85
CCDC28B-201ENST00000373602 RNF112Q9ULX5 631 aa20.37■□□□□ 0.85
CCDC28B-201ENST00000373602 IGKV3D-11A0A0A0MRZ8 115 aa20.36■□□□□ 0.85
CCDC28B-201ENST00000373602 ESYT3A0FGR9 886 aa20.36■□□□□ 0.85
CCDC28B-201ENST00000373602 FAM227AF5H4B4 570 aa20.36■□□□□ 0.85
CCDC28B-201ENST00000373602 TBX6O95947 436 aaPredicted RBP20.36■□□□□ 0.85
CCDC28B-201ENST00000373602 HNRNPH1P31943 449 aaKnown RBP20.36■□□□□ 0.85
CCDC28B-201ENST00000373602 BTN3A2P78410 334 aa20.36■□□□□ 0.85
CCDC28B-201ENST00000373602 SLC7A5Q01650 507 aa20.36■□□□□ 0.85
CCDC28B-201ENST00000373602 DLG1Q12959 904 aa20.36■□□□□ 0.85
CCDC28B-201ENST00000373602 C4orf17Q53FE4 359 aa20.36■□□□□ 0.85
CCDC28B-201ENST00000373602 VN1R5Q7Z5H4 357 aa20.36■□□□□ 0.85
CCDC28B-201ENST00000373602 ISCA2Q86U28 154 aa20.36■□□□□ 0.85
CCDC28B-201ENST00000373602 SLC5A8Q8N695 610 aa20.36■□□□□ 0.85
CCDC28B-201ENST00000373602 SNX31Q8N9S9 440 aa20.36■□□□□ 0.85
CCDC28B-201ENST00000373602 STAG3L4Q8TBR4 150 aa20.36■□□□□ 0.85
CCDC28B-201ENST00000373602 ELP5Q8TE02 316 aa20.36■□□□□ 0.85
CCDC28B-201ENST00000373602 CCT6BQ92526 530 aa20.36■□□□□ 0.85
CCDC28B-201ENST00000373602 FAR2Q96K12 515 aa20.36■□□□□ 0.85
CCDC28B-201ENST00000373602 NPLQ9BXD5 320 aaPredicted RBP20.36■□□□□ 0.85
CCDC28B-201ENST00000373602 RHBGQ9H310 441 aa20.36■□□□□ 0.85
CCDC28B-201ENST00000373602 ABI3Q9P2A4 366 aa20.36■□□□□ 0.85
CCDC28B-201ENST00000373602 OSGIN2Q9Y236 505 aa20.36■□□□□ 0.85
CCDC28B-201ENST00000373602 SVILO95425 2214 aa20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 TCRBV16S1A1N1A0A5B0 115 aa20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 ANKDD1BA6NHY2 528 aa20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 ERI3O43414 337 aaKnown RBP20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 MAN1A2O60476 641 aa20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms