RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 LINC00854A0A1B0GVQ3 168 aa15.73■□□□□ 0.11
SDC4-201ENST00000372733 GNG14A0A1W2PPG7 69 aa15.73■□□□□ 0.11
SDC4-201ENST00000372733 EIF3FO00303 357 aaPredicted RBP15.73■□□□□ 0.11
SDC4-201ENST00000372733 CCRL2O00421 344 aa15.73■□□□□ 0.11
SDC4-201ENST00000372733 GALTP07902 379 aa15.73■□□□□ 0.11
SDC4-201ENST00000372733 STK19P49842 368 aaPredicted RBP15.73■□□□□ 0.11
SDC4-201ENST00000372733 PTSQ03393 145 aa15.73■□□□□ 0.11
SDC4-201ENST00000372733 DMPKQ09013 629 aa15.73■□□□□ 0.11
SDC4-201ENST00000372733 SCARB2Q14108 478 aa15.73■□□□□ 0.11
SDC4-201ENST00000372733 LIPJQ5W064 366 aa15.73■□□□□ 0.11
SDC4-201ENST00000372733 C19orf48Q6RUI8 117 aa15.73■□□□□ 0.11
SDC4-201ENST00000372733 VPS37AQ8NEZ2 397 aa15.73■□□□□ 0.11
SDC4-201ENST00000372733 CCDC32Q9BV29 185 aa15.73■□□□□ 0.11
SDC4-201ENST00000372733 CNPPD1Q9BV87 410 aa15.73■□□□□ 0.11
SDC4-201ENST00000372733 SGK2Q9HBY8 427 aa15.73■□□□□ 0.11
SDC4-201ENST00000372733 RHCGQ9UBD6 479 aa15.73■□□□□ 0.11
SDC4-201ENST00000372733 STOML2Q9UJZ1 356 aa15.73■□□□□ 0.11
SDC4-201ENST00000372733 TMEM98Q9Y2Y6 226 aa15.73■□□□□ 0.11
SDC4-201ENST00000372733 MGAT4DA6NG13 374 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 HOXC11O43248 304 aaPredicted RBP15.72■□□□□ 0.11
SDC4-201ENST00000372733 SLITRK5O94991 958 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 CCNB2O95067 398 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 KRT75O95678 551 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 MPC1LP0DKB6 136 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 POU1F1P28069 291 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 SOX3P41225 446 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 AP1S2P56377 157 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 HBA1P69905 142 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 NKX3-2P78367 333 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 TEKQ02763 1124 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 SP140Q13342 867 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 TIMM50Q3ZCQ8 353 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 EEF1AKMT2Q5JPI9 291 aaKnown RBP15.72■□□□□ 0.11
SDC4-201ENST00000372733 TPRG1Q6ZUI0 275 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 AQP11Q8NBQ7 271 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 C9orf43Q8TAL5 461 aaPredicted RBP15.72■□□□□ 0.11
SDC4-201ENST00000372733 GPR151Q8TDV0 419 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 ADAMTS19Q8TE59 1207 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 VOPP1Q96AW1 172 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 OPALINQ96PE5 141 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 C19orf43Q9BQ61 176 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 CDCA4Q9BXL8 241 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 BRD9Q9H8M2 597 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 CCDC177Q9NQR7 707 aaPredicted RBP15.72■□□□□ 0.11
SDC4-201ENST00000372733 EXO1Q9UQ84 846 aaKnown RBP15.72■□□□□ 0.11
SDC4-201ENST00000372733 BOLA1Q9Y3E2 137 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 PCDHB7Q9Y5E2 793 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 PRAMEF33A0A0G2JMD5 474 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 EFCAB10A6NFE3 127 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 PRAMEF10O60809 474 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 TNFRSF21O75509 655 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 GBAP04062 536 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 C1SP09871 688 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 TGM4P49221 684 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 FLT3LGP49771 235 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 CDC42P60953 191 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 ELAVL2Q12926 359 aaKnown RBP15.72■□□□□ 0.11
SDC4-201ENST00000372733 NAE1Q13564 534 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 GPR50Q13585 617 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 CCSMST1Q4G0I0 132 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 GCNT6Q5T4J0 391 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 SLC8B1Q6J4K2 584 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 OR5AK3PQ8NH89 298 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 SLC35A5Q9BS91 424 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 BARHL1Q9BZE3 327 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 TRIM39Q9HCM9 518 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 ZNF282Q9UDV7 671 aaPredicted RBP15.72■□□□□ 0.11
SDC4-201ENST00000372733 MUTYHQ9UIF7 546 aa15.72■□□□□ 0.11
SDC4-201ENST00000372733 ARHGEF33A8MVX0 844 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 CAPN5O15484 640 aaPredicted RBP15.71■□□□□ 0.11
SDC4-201ENST00000372733 GUCY1B2O75343 617 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 C6orf47O95873 294 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 CKMT1AP12532 417 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 CNR2P34972 360 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 CTSOP43234 321 aaPredicted RBP15.71■□□□□ 0.11
SDC4-201ENST00000372733 ASMTP46597 345 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 RFX2P48378 723 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 RACK1P63244 317 aaKnown RBP15.71■□□□□ 0.11
SDC4-201ENST00000372733 MRPS15P82914 257 aaKnown RBP15.71■□□□□ 0.11
SDC4-201ENST00000372733 CRHR2Q13324 411 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 ANXA8L1Q5VT79 327 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 ZNF517Q6ZMY9 492 aaPredicted RBP15.71■□□□□ 0.11
SDC4-201ENST00000372733 PTCHD4Q6ZW05 846 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 SAMD11Q96NU1 681 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 IL4I1Q96RQ9 567 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 TAPBPLQ9BX59 468 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 ASPNQ9BXN1 380 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 C11orf16Q9NQ32 467 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 ACER3Q9NUN7 267 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 TAS2R9Q9NYW1 312 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 FTSJ1Q9UET6 329 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 TMEM202A6NGA9 273 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 GREM1O60565 184 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 CBLP22681 906 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 MAPK8P45983 427 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 LMAN2Q12907 356 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 STARD3Q14849 445 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 ZFP69Q49AA0 526 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 KLHL17Q6TDP4 642 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 LAX1Q8IWV1 398 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms