RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 KCNE1P15382 129 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 PCK1P35558 622 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 POU6F1Q14863 301 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 TMEM44Q2T9K0 475 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 EML3Q32P44 896 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 C9orf50Q5SZB4 431 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 C1orf53Q5VUE5 145 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 SLC22A10Q63ZE4 541 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 CCNI2Q6ZMN8 369 aaPredicted RBP3.95□□□□□ -1.78
USH2A-202ENST00000366942 ZNF621Q6ZSS3 439 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 MRPL21Q7Z2W9 205 aaKnown RBP3.95□□□□□ -1.78
USH2A-202ENST00000366942 CDH24Q86UP0 819 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 ACVR1CQ8NER5 493 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 OR6K2Q8NGY2 324 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 ZNF566Q969W8 418 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 ZMYND19Q96E35 227 aaPredicted RBP3.95□□□□□ -1.78
USH2A-202ENST00000366942 ATXN7L3BQ96GX2 97 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 GAL3ST1Q99999 423 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 C1orf198Q9H425 327 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 BCO1Q9HAY6 547 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 SLC6A20Q9NP91 592 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 DDX4Q9NQI0 724 aaKnown RBP3.95□□□□□ -1.78
USH2A-202ENST00000366942 KLHL13Q9P2N7 655 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 XPO7Q9UIA9 1087 aaKnown RBP3.95□□□□□ -1.78
USH2A-202ENST00000366942 TLCD2A6NGC4 264 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 I6L893 689 aaPredicted RBP3.94□□□□□ -1.78
USH2A-202ENST00000366942 STK16O75716 305 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 TNFAIP8O95379 198 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 PRAMEF1O95521 474 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 PRPS1L1P21108 318 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 PTGER3P43115 390 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 GPR3P46089 330 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 HSPA7P48741 367 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 TSC22D1Q15714 1073 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 DPCR1Q3MIW9 517 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 TRIM68Q6AZZ1 485 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 TMEM108Q6UXF1 575 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 ZSCAN2Q7Z7L9 614 aaPredicted RBP3.94□□□□□ -1.78
USH2A-202ENST00000366942 RTN4RL1Q86UN2 441 aaPredicted RBP3.94□□□□□ -1.78
USH2A-202ENST00000366942 SLC34A3Q8N130 599 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 TMIEQ8NEW7 156 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 OR7A2PQ8NGA2 310 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 OR6Y1Q8NGX8 325 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 Q96MT0 163 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 FMO2Q99518 471 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 NUDT16L1Q9BRJ7 211 aaKnown RBP3.94□□□□□ -1.78
USH2A-202ENST00000366942 INTS9Q9NV88 658 aaKnown RBP3.94□□□□□ -1.78
USH2A-202ENST00000366942 B3GAT1Q9P2W7 334 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 AJAP1Q9UKB5 411 aaPredicted RBP3.94□□□□□ -1.78
USH2A-202ENST00000366942 COPS3Q9UNS2 423 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 MTF2Q9Y483 593 aaPredicted RBP3.94□□□□□ -1.78
USH2A-202ENST00000366942 CREBBPQ92793 2442 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 A6NHS1 94 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 METTL12A8MUP2 240 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 MDM4O15151 490 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 RECQL5O94762 991 aaPredicted RBP3.94□□□□□ -1.78
USH2A-202ENST00000366942 IFNGR1P15260 489 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 CEBPBP17676 345 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 TGFBR2P37173 567 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 HTR3AP46098 478 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 BDKRB1P46663 353 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 UQCRFS1P47985 274 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 SIRPAP78324 504 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 SLC34A1Q06495 639 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 AUHQ13825 339 aaKnown RBP3.94□□□□□ -1.78
USH2A-202ENST00000366942 ZNF273Q14593 569 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 ZNF528Q3MIS6 628 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 GALNTL6Q49A17 601 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 GARNL3Q5VVW2 1013 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 PYHIN1Q6K0P9 492 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 XKRXQ6PP77 449 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 PHTF2Q8N3S3 785 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 FNDC8Q8TC99 324 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 HAS1Q92839 578 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 SLC25A36Q96CQ1 311 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 ZC3HAV1LQ96H79 300 aaKnown RBP3.94□□□□□ -1.78
USH2A-202ENST00000366942 PIMREGQ9BSJ6 248 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 COMMD4Q9H0A8 199 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 UBTD1Q9HAC8 227 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 ZFP69BQ9UJL9 534 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 MED31Q9Y3C7 131 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 SDK1Q7Z5N4 2213 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 ATP6AP2A0A1C7CYW4 349 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 HTR3EA5X5Y0 456 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 TTC34A8MYJ7 566 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 C9IYK1 514 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 ERI3O43414 337 aaKnown RBP3.94□□□□□ -1.78
USH2A-202ENST00000366942 ATP6AP2O75787 350 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 MYCLP1P12525 358 aaPredicted RBP3.94□□□□□ -1.78
USH2A-202ENST00000366942 MYF5P13349 255 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 CCNA2P20248 432 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 FUT4P22083 530 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 CDKN1CP49918 316 aaPredicted RBP3.94□□□□□ -1.78
USH2A-202ENST00000366942 OR12D2P58182 307 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 TAS2R41P59536 307 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 DLG1Q12959 904 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 NPTX1Q15818 432 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 SLC5A12Q1EHB4 618 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 SOHLH1Q5JUK2 328 aa3.94□□□□□ -1.78
USH2A-202ENST00000366942 MPP7Q5T2T1 576 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms