RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 OR2B3O76000 313 aa14.35□□□□□ -0.11
COL17A1-201ENST00000353479 RENP00797 406 aa14.35□□□□□ -0.11
COL17A1-201ENST00000353479 EGFLAMQ63HQ2 1017 aa14.35□□□□□ -0.11
COL17A1-201ENST00000353479 Q6ZSR6 202 aa14.35□□□□□ -0.11
COL17A1-201ENST00000353479 SLC22A15Q8IZD6 547 aa14.35□□□□□ -0.11
COL17A1-201ENST00000353479 RTP3Q9BQQ7 232 aa14.35□□□□□ -0.11
COL17A1-201ENST00000353479 KATNBL1Q9H079 304 aa14.35□□□□□ -0.11
COL17A1-201ENST00000353479 IGSF5Q9NSI5 407 aa14.35□□□□□ -0.11
COL17A1-201ENST00000353479 F11P03951 625 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 UQCRC2P22695 453 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 PAX7P23759 505 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 PSMA1P25786 263 aaKnown RBP14.34□□□□□ -0.11
COL17A1-201ENST00000353479 PIANPQ8IYJ0 282 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 OR5AR1Q8NGP9 310 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 HLA-CQ95604 372 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 NELL2Q99435 816 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 C1orf21Q9H246 121 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 KHDRBS3O75525 346 aaKnown RBP14.34□□□□□ -0.11
COL17A1-201ENST00000353479 HSD3B1P14060 373 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 C4BPBP20851 252 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 RPS3P23396 243 aaKnown RBP eCLIP14.34□□□□□ -0.11
COL17A1-201ENST00000353479 HSD3B2P26439 372 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 CATSPEREQ5SY80 951 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 USP30Q70CQ3 517 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 CD200R1Q8TD46 325 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 BCL2L14Q9BZR8 327 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 TAS2R9Q9NYW1 312 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 NUMBLQ9Y6R0 609 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 ABCA3Q99758 1704 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 IQCMA0A1B0GVH7 501 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 PLGP00747 810 aaPredicted RBP14.34□□□□□ -0.11
COL17A1-201ENST00000353479 STAT5AP42229 794 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 PERM1Q5SV97 790 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 LIPIQ6XZB0 460 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 EFHD2Q96C19 240 aaPredicted RBP14.34□□□□□ -0.11
COL17A1-201ENST00000353479 TOE1Q96GM8 510 aaKnown RBP14.34□□□□□ -0.11
COL17A1-201ENST00000353479 RIMKLBQ9ULI2 386 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 FAM92AA1XBS5 289 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 TRAPPC6AO75865 159 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 LYNP07948 512 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 FBLP22087 321 aaKnown RBP14.34□□□□□ -0.11
COL17A1-201ENST00000353479 FMO3P31513 532 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 DCTN2Q13561 401 aaKnown RBP14.34□□□□□ -0.11
COL17A1-201ENST00000353479 TAB1Q15750 504 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 SLCO6A1Q86UG4 719 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 TBX5Q99593 518 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 SLC12A9Q9BXP2 914 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 TRIM8Q9BZR9 551 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 AMBNQ9NP70 447 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 NPPAP01160 153 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 LINGO3P0C6S8 592 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 NR4A1P22736 598 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 P2RY2P41231 377 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 CCNIQ14094 377 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 SHHQ15465 462 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 ADGRD2Q7Z7M1 963 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 TMIEQ8NEW7 156 aa14.34□□□□□ -0.11
COL17A1-201ENST00000353479 ARHGEF33A8MVX0 844 aa14.33□□□□□ -0.11
COL17A1-201ENST00000353479 CHRM5P08912 532 aaPredicted RBP14.33□□□□□ -0.11
COL17A1-201ENST00000353479 DNASE1L1P49184 302 aa14.33□□□□□ -0.11
COL17A1-201ENST00000353479 CYBRD1Q53TN4 286 aa14.33□□□□□ -0.11
COL17A1-201ENST00000353479 REEP3Q6NUK4 255 aa14.33□□□□□ -0.11
COL17A1-201ENST00000353479 GPR150Q8NGU9 434 aa14.33□□□□□ -0.11
COL17A1-201ENST00000353479 RLN3Q8WXF3 142 aa14.33□□□□□ -0.11
COL17A1-201ENST00000353479 KIAA1143Q96AT1 154 aaPredicted RBP14.33□□□□□ -0.11
COL17A1-201ENST00000353479 KCNS3Q9BQ31 491 aa14.33□□□□□ -0.11
COL17A1-201ENST00000353479 CHCHD6Q9BRQ6 235 aa14.33□□□□□ -0.11
COL17A1-201ENST00000353479 STOX2Q9P2F5 926 aaPredicted RBP14.33□□□□□ -0.11
COL17A1-201ENST00000353479 ATXN10Q9UBB4 475 aa14.33□□□□□ -0.11
COL17A1-201ENST00000353479 PCTPQ9UKL6 214 aa14.33□□□□□ -0.11
COL17A1-201ENST00000353479 THSD7AQ9UPZ6 1657 aa14.33□□□□□ -0.11
COL17A1-201ENST00000353479 KIAA0100Q14667 2235 aaKnown RBP14.33□□□□□ -0.11
COL17A1-201ENST00000353479 E7EQ34 232 aa14.33□□□□□ -0.12
COL17A1-201ENST00000353479 PRAMEF26H0Y7S4 382 aa14.33□□□□□ -0.12
COL17A1-201ENST00000353479 KCNJ13O60928 360 aa14.33□□□□□ -0.12
COL17A1-201ENST00000353479 C9P02748 559 aa14.33□□□□□ -0.12
COL17A1-201ENST00000353479 ZNF140P52738 457 aaPredicted RBP14.33□□□□□ -0.12
COL17A1-201ENST00000353479 SH3BP2P78314 561 aa14.33□□□□□ -0.12
COL17A1-201ENST00000353479 GFOD2Q3B7J2 385 aa14.33□□□□□ -0.12
COL17A1-201ENST00000353479 NANOGP8Q6NSW7 305 aa14.33□□□□□ -0.12
COL17A1-201ENST00000353479 LAPTM4BQ86VI4 370 aa14.33□□□□□ -0.12
COL17A1-201ENST00000353479 OR5P2Q8WZ92 322 aa14.33□□□□□ -0.12
COL17A1-201ENST00000353479 SH3YL1Q96HL8 342 aaPredicted RBP14.33□□□□□ -0.12
COL17A1-201ENST00000353479 COPS4Q9BT78 406 aa14.33□□□□□ -0.12
COL17A1-201ENST00000353479 RMI1Q9H9A7 625 aa14.33□□□□□ -0.12
COL17A1-201ENST00000353479 NANOGQ9H9S0 305 aa14.33□□□□□ -0.12
COL17A1-201ENST00000353479 PLEKHA1Q9HB21 404 aa14.33□□□□□ -0.12
COL17A1-201ENST00000353479 SDHAF3Q9NRP4 125 aa14.33□□□□□ -0.12
COL17A1-201ENST00000353479 SPATA2Q9UM82 520 aa14.33□□□□□ -0.12
COL17A1-201ENST00000353479 SLC30A4O14863 429 aa14.33□□□□□ -0.12
COL17A1-201ENST00000353479 IRS1P35568 1242 aa14.33□□□□□ -0.12
COL17A1-201ENST00000353479 RAB14P61106 215 aa14.33□□□□□ -0.12
COL17A1-201ENST00000353479 CYP27C1Q4G0S4 372 aa14.33□□□□□ -0.12
COL17A1-201ENST00000353479 PEG10Q86TG7 708 aaKnown RBP14.33□□□□□ -0.12
COL17A1-201ENST00000353479 OR2AJ1Q8NGZ0 328 aa14.33□□□□□ -0.12
COL17A1-201ENST00000353479 MCFD2Q8NI22 146 aa14.33□□□□□ -0.12
COL17A1-201ENST00000353479 ARRDC2Q8TBH0 407 aa14.33□□□□□ -0.12
COL17A1-201ENST00000353479 NFKBIL1Q9UBC1 381 aaPredicted RBP14.33□□□□□ -0.12
COL17A1-201ENST00000353479 OR52A4PA6NMU1 304 aa14.33□□□□□ -0.12
COL17A1-201ENST00000353479 ZNF726A6NNF4 738 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms