RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 ZNF252P-AS1Q0IIN9 211 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 GINS1Q14691 196 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 CLCA4Q14CN2 919 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 ABRAXAS2Q15018 415 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 ARSIQ5FYB1 569 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 SHQ1Q6PI26 577 aaKnown RBP8.41□□□□□ -1.06
RTN3-202ENST00000339997 Q6ZVL8 140 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 KLHL36Q8N4N3 616 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 OR5M3Q8NGP4 307 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 ZBED6CLQ96FA7 236 aaPredicted RBP8.41□□□□□ -1.06
RTN3-202ENST00000339997 DEFB118Q96PH6 123 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 FEVQ99581 238 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 SLC32A1Q9H598 525 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 IFT46Q9NQC8 304 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 NECTIN3Q9NQS3 549 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 TRPS1Q9UHF7 1281 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 KRBA1A5PL33 1030 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 URADA6NGE7 173 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 H0YJX3 145 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 M0R233 179 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 PLSCR1O15162 318 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 SSX5O60225 188 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 PAPSS2O95340 614 aaPredicted RBP8.41□□□□□ -1.06
RTN3-202ENST00000339997 CAPN3P20807 821 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 POLR2IP36954 125 aaKnown RBP8.41□□□□□ -1.06
RTN3-202ENST00000339997 OR3A3P47888 321 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 OR3A2P47893 321 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 TUBA3EQ6PEY2 450 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 KBTBD6Q86V97 674 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 AMIGO3Q86WK7 504 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 OR51L1Q8NGJ5 315 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 ZFP90Q8TF47 636 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 ZNF700Q9H0M5 742 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 C5AR2Q9P296 337 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 DPP7Q9UHL4 492 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 OR6C75A6NL08 312 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 GRM6O15303 877 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 GPR39O43194 453 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 BCAS1O75363 584 aaPredicted RBP8.4□□□□□ -1.06
RTN3-202ENST00000339997 APEHP13798 732 aaKnown RBP8.4□□□□□ -1.06
RTN3-202ENST00000339997 IDSP22304 550 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 GADD45AP24522 165 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 NAA10P41227 235 aaPredicted RBP8.4□□□□□ -1.06
RTN3-202ENST00000339997 STC1P52823 247 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 GNG2P59768 71 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 ALG11Q2TAA5 492 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 UNC50Q53HI1 259 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 WASH2PQ6VEQ5 465 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 TMEM199Q8N511 208 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 ACVR1CQ8NER5 493 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 NEIL3Q8TAT5 605 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 SLC16A10Q8TF71 515 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 THEM6Q8WUY1 208 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 CNDP2Q96KP4 475 aaKnown RBP8.4□□□□□ -1.06
RTN3-202ENST00000339997 AP1S3Q96PC3 154 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 METTL8Q9H825 291 aaKnown RBP8.4□□□□□ -1.06
RTN3-202ENST00000339997 PRDM9Q9NQV7 894 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 FAM118AQ9NWS6 357 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 ZIM2Q9NZV7 527 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 ZNF639Q9UID6 485 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 GNG8Q9UK08 70 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 MKLN1Q9UL63 735 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 TMEM98Q9Y2Y6 226 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 MYO5AQ9Y4I1 1855 aaKnown RBP8.4□□□□□ -1.06
RTN3-202ENST00000339997 H3BMQ9 156 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 AKAP8O43823 692 aaKnown RBP8.4□□□□□ -1.06
RTN3-202ENST00000339997 PRAMEF12O95522 483 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 RFC2P35250 354 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 CLCNKAP51800 687 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 AP3S2P59780 193 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 DPY19L3Q6ZPD9 716 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 CLECL1Q8IZS7 167 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 SPAG16Q8N0X2 631 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 TEX19Q8NA77 164 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 GATSQ8NAP1 163 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.4□□□□□ -1.064e-29■□□□□ 10.6
RTN3-202ENST00000339997 PRICKLE1Q96MT3 831 aaPredicted RBP8.4□□□□□ -1.06
RTN3-202ENST00000339997 COG8Q96MW5 612 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 PAAF1Q9BRP4 392 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 HCN3Q9P1Z3 774 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 FBXO9Q9UK97 447 aaPredicted RBP8.4□□□□□ -1.06
RTN3-202ENST00000339997 ZNF510Q9Y2H8 683 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 DERAQ9Y315 318 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 GVINP1Q7Z2Y8 2422 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 NINQ8N4C6 2090 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 EYSQ5T1H1 3165 aa8.4□□□□□ -1.06
RTN3-202ENST00000339997 KIAA0100Q14667 2235 aaKnown RBP8.4□□□□□ -1.06
RTN3-202ENST00000339997 ZNF705EA8MWA4 302 aaPredicted RBP8.4□□□□□ -1.07
RTN3-202ENST00000339997 USP2O75604 605 aaPredicted RBP8.4□□□□□ -1.07
RTN3-202ENST00000339997 CDC123O75794 336 aaPredicted RBP8.4□□□□□ -1.07
RTN3-202ENST00000339997 ATE1O95260 518 aa8.4□□□□□ -1.07
RTN3-202ENST00000339997 LDOC1O95751 146 aaPredicted RBP8.4□□□□□ -1.07
RTN3-202ENST00000339997 ACVR2AP27037 513 aa8.4□□□□□ -1.07
RTN3-202ENST00000339997 STOMP27105 288 aa8.4□□□□□ -1.07
RTN3-202ENST00000339997 PRDX3P30048 256 aaKnown RBP8.4□□□□□ -1.07
RTN3-202ENST00000339997 CDKN1CP49918 316 aaPredicted RBP8.4□□□□□ -1.07
RTN3-202ENST00000339997 PSMA6P60900 246 aaKnown RBP8.4□□□□□ -1.07
RTN3-202ENST00000339997 ABHD18Q0P651 414 aa8.4□□□□□ -1.07
RTN3-202ENST00000339997 DUOXA1Q1HG43 343 aa8.4□□□□□ -1.07
RTN3-202ENST00000339997 CTC1Q2NKJ3 1217 aa8.4□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms