RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 ULBP3Q9BZM4 244 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 ANKMY1Q9P2S6 941 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 ADAM30Q9UKF2 790 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 CXCR6O00574 342 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 KLF11O14901 512 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 GJB3O75712 270 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 SLC35E2BP0CK96 405 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 GPLD1P80108 840 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 TMEM196Q5HYL7 178 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 GALNT12Q8IXK2 581 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 KLHDC8AQ8IYD2 350 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 C8orf59Q8N0T1 100 aaPredicted RBP9.76□□□□□ -0.85
USP54-201ENST00000339859 ZUFSPQ96AP4 578 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 RMND5BQ96G75 393 aaPredicted RBP9.76□□□□□ -0.85
USP54-201ENST00000339859 GPATCH1Q9BRR8 931 aaKnown RBP9.76□□□□□ -0.85
USP54-201ENST00000339859 CRB3Q9BUF7 120 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 EGFL7Q9UHF1 273 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 ZNF726A6NNF4 738 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 ITM2AO43736 263 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 MAN1A2O60476 641 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 TBX10O75333 385 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 PRG2P13727 222 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 ENGP17813 658 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 OR4D1Q15615 310 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 NSDHLQ15738 373 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 TCTN1Q2MV58 587 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 DEFB110Q30KQ9 67 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 ARL10Q8N8L6 244 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 CADM4Q8NFZ8 388 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 MKS1Q9NXB0 559 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 GMPPBQ9Y5P6 360 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 RIIAD1A6NNX1 92 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 G3V2T6 193 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 TNFRSF11BO00300 401 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 SNX4O95219 450 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 C1orf105O95561 183 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 TSPAN19P0C672 248 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 CDK4P11802 303 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 TYSND1Q2T9J0 566 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 ZNF311Q5JNZ3 666 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 SPESP1Q6UW49 350 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 C19orf47Q8N9M1 422 aaKnown RBP9.75□□□□□ -0.85
USP54-201ENST00000339859 OR10A6Q8NH74 314 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 WBP2Q969T9 261 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 TBC1D23Q9NUY8 699 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 STOML2Q9UJZ1 356 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 TRBC2A0A5B9 178 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 HYKKA2RU49 373 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 CLOCKO15516 846 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 EMC8O43402 210 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 C6orf47O95873 294 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 KRT8P05787 483 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 AOAHP28039 575 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 FAM91A1Q658Y4 838 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 ZCCHC12Q6PEW1 402 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 SYCE2Q6PIF2 218 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 OAFQ86UD1 273 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 SLC22A15Q8IZD6 547 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 OR5AK3PQ8NH89 298 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 PHOSPHO1Q8TCT1 267 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 TMEM234Q8WY98 164 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 GAL3ST3Q96A11 431 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 F2RL3Q96RI0 385 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 INSM2Q96T92 566 aaPredicted RBP9.75□□□□□ -0.85
USP54-201ENST00000339859 C8orf4Q9NR00 106 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 ZNF446Q9NWS9 450 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 PPP4R1LQ9P1A2 415 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 PRSS21Q9Y6M0 314 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 SIPA1L1O43166 1804 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 AK1P00568 194 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 FAM58BPP0C7Q3 252 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 RRADP55042 308 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 KCNJ2P63252 427 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 LCN1P1Q5VSP4 162 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 NSMCE3Q96MG7 304 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 DCBLD2Q96PD2 775 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 BHLHE41Q9C0J9 482 aaPredicted RBP9.75□□□□□ -0.85
USP54-201ENST00000339859 BRF2Q9HAW0 419 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 CLEC4EQ9ULY5 219 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 GREB1LQ9C091 1923 aaPredicted RBP9.75□□□□□ -0.85
USP54-201ENST00000339859 A0A1W2PPC4 97 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 IL3P08700 152 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 PCBP2Q15366 365 aaKnown RBP eCLIP9.75□□□□□ -0.852e-11■■■■□ 23.5
USP54-201ENST00000339859 CTC1Q2NKJ3 1217 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 TTC23Q5W5X9 447 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 NOXRED1Q6NXP6 359 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 DUS1LQ6P1R4 473 aaKnown RBP9.75□□□□□ -0.85
USP54-201ENST00000339859 MICU2Q8IYU8 434 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 SLC5A8Q8N695 610 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 HUS1BQ8NHY5 278 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 EZH1Q92800 747 aaPredicted RBP9.75□□□□□ -0.85
USP54-201ENST00000339859 TIGARQ9NQ88 270 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 TM7SF3Q9NS93 570 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 NME7Q9Y5B8 376 aa9.75□□□□□ -0.85
USP54-201ENST00000339859 GPR37L1O60883 481 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 CCNB2O95067 398 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 SLC16A8O95907 504 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 GBAP04062 536 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 KCNJ5P48544 419 aa9.74□□□□□ -0.85
USP54-201ENST00000339859 EMP2P54851 167 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms