RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 TYRP1P17643 537 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 CCR2P41597 374 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 SOX9P48436 509 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 HTR6P50406 440 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 AFF3P51826 1226 aaKnown RBP6.6□□□□□ -1.35
SF3B1-201ENST00000335508 HK3P52790 923 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 DGKQP52824 942 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 HTR4Q13639 388 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 TMEM196Q5HYL7 178 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 GARNL3Q5VVW2 1013 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 FAAH2Q6GMR7 532 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 CCDC81Q6ZN84 652 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 COMMD6Q7Z4G1 85 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 AMIGO2Q86SJ2 522 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 PLD3Q8IV08 490 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 ZDHHC21Q8IVQ6 265 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 OR5L2Q8NGL0 311 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 IGSF5Q9NSI5 407 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 CFAP20Q9Y6A4 193 aaKnown RBP6.6□□□□□ -1.35
SF3B1-201ENST00000335508 AP4B1Q9Y6B7 739 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 COL6A6A6NMZ7 2263 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 PNMA8CA0A1B0GUJ8 204 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 TOP3BO95985 862 aaKnown RBP6.6□□□□□ -1.35
SF3B1-201ENST00000335508 KLK1P06870 262 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 ZCCHC18P0CG32 403 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 AQP1P29972 269 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 CCKBRP32239 447 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 IGFALSP35858 605 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 DEFA1P59665 94 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 DEFA3P59666 94 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 ZNF155Q12901 538 aaPredicted RBP6.6□□□□□ -1.35
SF3B1-201ENST00000335508 GPNMBQ14956 572 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 KLHDC8BQ8IXV7 354 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 HUS1BQ8NHY5 278 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 CEP76Q8TAP6 659 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 CHFRQ96EP1 664 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 XKR8Q9H6D3 395 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 ATXN10Q9UBB4 475 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 SIT1Q9Y3P8 196 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 WNK3Q9BYP7 1800 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 FER1L6Q2WGJ9 1857 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 TLX3O43711 291 aaPredicted RBP6.6□□□□□ -1.35
SF3B1-201ENST00000335508 MYOGP15173 224 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 DECR1Q16698 335 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 C21orf62-AS1Q17RA5 79 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 GIPC3Q8TF64 312 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 KLHL6Q8WZ60 621 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 MYDGFQ969H8 173 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 ALG14Q96F25 216 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 IL17FQ96PD4 163 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 CDK15Q96Q40 435 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 GTPBP2Q9BX10 602 aaKnown RBP6.6□□□□□ -1.35
SF3B1-201ENST00000335508 TBL1XR1Q9BZK7 514 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 ACSS1Q9NUB1 689 aaPredicted RBP6.6□□□□□ -1.35
SF3B1-201ENST00000335508 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.6□□□□□ -1.352e-7■■■■■ 28.1
SF3B1-201ENST00000335508 SLC5A10A0PJK1 596 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 TP53I11O14683 189 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 AKAP8O43823 692 aaKnown RBP6.59□□□□□ -1.35
SF3B1-201ENST00000335508 NAT2P11245 290 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 MTHFD1P11586 935 aaKnown RBP6.59□□□□□ -1.35
SF3B1-201ENST00000335508 XRCC1P18887 633 aaPredicted RBP6.59□□□□□ -1.35
SF3B1-201ENST00000335508 HTR1EP28566 365 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 GGT5P36269 586 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 MTAPQ13126 283 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 RCAN2Q14206 197 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.59□□□□□ -1.354e-7■■■■□ 22.4
SF3B1-201ENST00000335508 SWT1Q5T5J6 900 aaKnown RBP6.59□□□□□ -1.35
SF3B1-201ENST00000335508 KIAA0895LQ68EN5 471 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 TNFAIP8L2Q6P589 184 aaPredicted RBP6.59□□□□□ -1.35
SF3B1-201ENST00000335508 POLR2J3Q9H1A7 115 aaKnown RBP6.59□□□□□ -1.35
SF3B1-201ENST00000335508 RIBC2Q9H4K1 309 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 FGF22Q9HCT0 170 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 UTS2RQ9UKP6 389 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 TMEM5Q9Y2B1 443 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 SCN2BO60939 215 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 FABP3P05413 133 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 RYKP34925 604 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 OPRD1P41143 372 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 XKP51811 444 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 SRP54P61011 504 aaKnown RBP6.59□□□□□ -1.35
SF3B1-201ENST00000335508 HYAL1Q12794 435 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 GK3PQ14409 553 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 ARHGAP40Q5TG30 622 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 REP15Q6BDI9 236 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 OR2T5Q6IEZ7 315 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 TMEM154Q6P9G4 183 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 PRR23CQ6ZRP0 262 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 TECPR1Q7Z6L1 1165 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 KLHDC8AQ8IYD2 350 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 AGBL5Q8NDL9 886 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 OR2L5Q8NG80 312 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 OR2T29Q8NH02 315 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 PTERQ96BW5 349 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 PTCHD1Q96NR3 888 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 CA14Q9ULX7 337 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 MYO9AB2RTY4 2548 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 TET1Q8NFU7 2136 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 ANTXRLA6NF34 631 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 CAPN14A8MX76 684 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 TNFRSF11BO00300 401 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms