RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 TBC1D3BA6NDS4 549 aa19.23■□□□□ 0.67
VPS53-201ENST00000291074 IL3P08700 152 aa19.23■□□□□ 0.67
VPS53-201ENST00000291074 OR1E2P47887 323 aa19.23■□□□□ 0.67
VPS53-201ENST00000291074 TUBA3CQ13748 450 aa19.23■□□□□ 0.67
VPS53-201ENST00000291074 TMEM52BQ4KMG9 183 aa19.23■□□□□ 0.67
VPS53-201ENST00000291074 FAM71E1Q6IPT2 247 aa19.23■□□□□ 0.67
VPS53-201ENST00000291074 CCDC71Q8IV32 467 aaPredicted RBP19.23■□□□□ 0.67
VPS53-201ENST00000291074 METTL4Q8N3J2 472 aa19.23■□□□□ 0.67
VPS53-201ENST00000291074 FGF13Q92913 245 aa19.23■□□□□ 0.67
VPS53-201ENST00000291074 CXorf40BQ96DE9 158 aa19.23■□□□□ 0.67
VPS53-201ENST00000291074 HSPBAP1Q96EW2 488 aa19.23■□□□□ 0.67
VPS53-201ENST00000291074 EHD1Q9H4M9 534 aa19.23■□□□□ 0.67
VPS53-201ENST00000291074 TMEM184CQ9NVA4 438 aa19.23■□□□□ 0.67
VPS53-201ENST00000291074 HCN2Q9UL51 889 aa19.23■□□□□ 0.67
VPS53-201ENST00000291074 NAALAD2Q9Y3Q0 740 aa19.23■□□□□ 0.67
VPS53-201ENST00000291074 MAP4K5Q9Y4K4 846 aa19.23■□□□□ 0.67
VPS53-201ENST00000291074 GOLGA4Q13439 2230 aaKnown RBP19.22■□□□□ 0.67
VPS53-201ENST00000291074 A0A0J9YVX5 310 aa19.22■□□□□ 0.67
VPS53-201ENST00000291074 C5orf67F2Z3F1 127 aa19.22■□□□□ 0.67
VPS53-201ENST00000291074 TNFRSF21O75509 655 aa19.22■□□□□ 0.67
VPS53-201ENST00000291074 JRKO75564 520 aa19.22■□□□□ 0.67
VPS53-201ENST00000291074 EPHX1P07099 455 aa19.22■□□□□ 0.67
VPS53-201ENST00000291074 CCDC159P0C7I6 412 aa19.22■□□□□ 0.67
VPS53-201ENST00000291074 GSSP48637 474 aa19.22■□□□□ 0.67
VPS53-201ENST00000291074 CYP4F2P78329 520 aa19.22■□□□□ 0.67
VPS53-201ENST00000291074 PDE7AQ13946 482 aa19.22■□□□□ 0.67
VPS53-201ENST00000291074 TMIGD1Q6UXZ0 262 aa19.22■□□□□ 0.67
VPS53-201ENST00000291074 SETD9Q8NE22 299 aa19.22■□□□□ 0.67
VPS53-201ENST00000291074 NFKBIDQ8NI38 313 aa19.22■□□□□ 0.67
VPS53-201ENST00000291074 MAGED4Q96JG8 741 aa19.22■□□□□ 0.67
VPS53-201ENST00000291074 DOHHQ9BU89 302 aa19.22■□□□□ 0.67
VPS53-201ENST00000291074 CERS4Q9HA82 394 aa19.22■□□□□ 0.67
VPS53-201ENST00000291074 RASSF1Q9NS23 344 aa19.22■□□□□ 0.67
VPS53-201ENST00000291074 GPR34Q9UPC5 381 aa19.22■□□□□ 0.67
VPS53-201ENST00000291074 C9P02748 559 aa19.22■□□□□ 0.67
VPS53-201ENST00000291074 MAP2K4P45985 399 aa19.22■□□□□ 0.67
VPS53-201ENST00000291074 EMX1Q04741 257 aaPredicted RBP19.22■□□□□ 0.67
VPS53-201ENST00000291074 KEAP1Q14145 624 aa19.22■□□□□ 0.67
VPS53-201ENST00000291074 ANKDD1AQ495B1 522 aa19.22■□□□□ 0.67
VPS53-201ENST00000291074 FAM109BQ6ICB4 259 aaPredicted RBP19.22■□□□□ 0.67
VPS53-201ENST00000291074 Q6ZPB1 254 aaPredicted RBP19.22■□□□□ 0.67
VPS53-201ENST00000291074 GET4Q7L5D6 327 aaPredicted RBP19.22■□□□□ 0.67
VPS53-201ENST00000291074 FAM124AQ86V42 546 aa19.22■□□□□ 0.67
VPS53-201ENST00000291074 RNF130Q86XS8 419 aa19.22■□□□□ 0.67
VPS53-201ENST00000291074 GOT1L1Q8NHS2 421 aaPredicted RBP19.22■□□□□ 0.67
VPS53-201ENST00000291074 RAB2BQ8WUD1 216 aa19.22■□□□□ 0.67
VPS53-201ENST00000291074 SUSD6Q92537 303 aa19.22■□□□□ 0.67
VPS53-201ENST00000291074 SMARCD2Q92925 531 aa19.22■□□□□ 0.67
VPS53-201ENST00000291074 FKBP10Q96AY3 582 aa19.22■□□□□ 0.67
VPS53-201ENST00000291074 MYNNQ9NPC7 610 aa19.22■□□□□ 0.67
VPS53-201ENST00000291074 ATAD3AQ9NVI7 634 aa19.22■□□□□ 0.67
VPS53-201ENST00000291074 ATG2AQ2TAZ0 1938 aa19.22■□□□□ 0.67
VPS53-201ENST00000291074 RTCAO00442 366 aaKnown RBP19.21■□□□□ 0.67
VPS53-201ENST00000291074 VEGFDO43915 354 aa19.21■□□□□ 0.67
VPS53-201ENST00000291074 ZBTB11O95625 1053 aaPredicted RBP19.21■□□□□ 0.67
VPS53-201ENST00000291074 SOAT1P35610 550 aa19.21■□□□□ 0.67
VPS53-201ENST00000291074 WASP42768 502 aa19.21■□□□□ 0.67
VPS53-201ENST00000291074 AQP6Q13520 282 aa19.21■□□□□ 0.67
VPS53-201ENST00000291074 EIF4HQ15056 248 aaKnown RBP19.21■□□□□ 0.67
VPS53-201ENST00000291074 SLC5A12Q1EHB4 618 aa19.21■□□□□ 0.67
VPS53-201ENST00000291074 FAHD1Q6P587 224 aa19.21■□□□□ 0.67
VPS53-201ENST00000291074 KLHL35Q6PF15 583 aa19.21■□□□□ 0.67
VPS53-201ENST00000291074 SLC16A12Q6ZSM3 486 aa19.21■□□□□ 0.67
VPS53-201ENST00000291074 PDZD3Q86UT5 571 aa19.21■□□□□ 0.67
VPS53-201ENST00000291074 PHF6Q8IWS0 365 aaKnown RBP eCLIP19.21■□□□□ 0.67
VPS53-201ENST00000291074 HERVK_113Q902F9 699 aa19.21■□□□□ 0.67
VPS53-201ENST00000291074 ZNF566Q969W8 418 aa19.21■□□□□ 0.67
VPS53-201ENST00000291074 TAMM41Q96BW9 452 aa19.21■□□□□ 0.67
VPS53-201ENST00000291074 PREBQ9HCU5 417 aa19.21■□□□□ 0.67
VPS53-201ENST00000291074 PRSS16Q9NQE7 514 aa19.21■□□□□ 0.67
VPS53-201ENST00000291074 WBP1LQ9NX94 342 aa19.21■□□□□ 0.67
VPS53-201ENST00000291074 TAC3Q9UHF0 121 aa19.21■□□□□ 0.67
VPS53-201ENST00000291074 NDRG4Q9ULP0 352 aaKnown RBP19.21■□□□□ 0.67
VPS53-201ENST00000291074 GMEB1Q9Y692 573 aa19.21■□□□□ 0.67
VPS53-201ENST00000291074 PI15O43692 258 aa19.21■□□□□ 0.67
VPS53-201ENST00000291074 GPR37L1O60883 481 aa19.21■□□□□ 0.67
VPS53-201ENST00000291074 PSMB5P28074 263 aa19.21■□□□□ 0.67
VPS53-201ENST00000291074 GCNT6Q5T4J0 391 aa19.21■□□□□ 0.67
VPS53-201ENST00000291074 AMZ2Q86W34 360 aa19.21■□□□□ 0.67
VPS53-201ENST00000291074 FAM81AQ8TBF8 368 aa19.21■□□□□ 0.67
VPS53-201ENST00000291074 TFGQ92734 400 aaPredicted RBP19.21■□□□□ 0.67
VPS53-201ENST00000291074 RAD51AP1Q96B01 352 aa19.21■□□□□ 0.67
VPS53-201ENST00000291074 CUEDC1Q9NWM3 386 aaPredicted RBP19.21■□□□□ 0.67
VPS53-201ENST00000291074 NDUFAF4Q9P032 175 aa19.21■□□□□ 0.67
VPS53-201ENST00000291074 RWDD3Q9Y3V2 267 aa19.21■□□□□ 0.67
VPS53-201ENST00000291074 IGLON5A6NGN9 336 aa19.2■□□□□ 0.66
VPS53-201ENST00000291074 TBX6O95947 436 aaPredicted RBP19.2■□□□□ 0.66
VPS53-201ENST00000291074 SELENOWP63302 87 aa19.2■□□□□ 0.66
VPS53-201ENST00000291074 SCARB2Q14108 478 aa19.2■□□□□ 0.66
VPS53-201ENST00000291074 TEAD4Q15561 434 aa19.2■□□□□ 0.66
VPS53-201ENST00000291074 DUS1LQ6P1R4 473 aaKnown RBP19.2■□□□□ 0.66
VPS53-201ENST00000291074 UNC5DQ6UXZ4 953 aa19.2■□□□□ 0.66
VPS53-201ENST00000291074 NINQ8N4C6 2090 aa19.2■□□□□ 0.66
VPS53-201ENST00000291074 OR52N2Q8NGI0 321 aa19.2■□□□□ 0.66
VPS53-201ENST00000291074 FAR1Q8WVX9 515 aa19.2■□□□□ 0.66
VPS53-201ENST00000291074 COX14Q96I36 57 aa19.2■□□□□ 0.66
VPS53-201ENST00000291074 PLGRKTQ9HBL7 147 aa19.2■□□□□ 0.66
VPS53-201ENST00000291074 HEATR5BQ9P2D3 2071 aa19.2■□□□□ 0.66
VPS53-201ENST00000291074 PRAMEF25A6NGN4 478 aa19.2■□□□□ 0.66
VPS53-201ENST00000291074 RB1P06400 928 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms