RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 EVA1AQ9H8M9 152 aa12.54□□□□□ -0.4
MSH2-201ENST00000233146 ENTPD4Q9Y227 616 aa12.54□□□□□ -0.4
MSH2-201ENST00000233146 A0A0G2JPF8 293 aa12.54□□□□□ -0.4
MSH2-201ENST00000233146 HNRNPCL3B7ZW38 293 aa12.54□□□□□ -0.4
MSH2-201ENST00000233146 CILPO75339 1184 aa12.54□□□□□ -0.4
MSH2-201ENST00000233146 DIRAS1O95057 198 aa12.54□□□□□ -0.4
MSH2-201ENST00000233146 HNRNPCL4P0DMR1 293 aa12.54□□□□□ -0.4
MSH2-201ENST00000233146 ATP5C1P36542 298 aaKnown RBP12.54□□□□□ -0.4
MSH2-201ENST00000233146 KCNJ5P48544 419 aa12.54□□□□□ -0.4
MSH2-201ENST00000233146 PAFAH1B3Q15102 231 aaKnown RBP12.54□□□□□ -0.4
MSH2-201ENST00000233146 MICBQ29980 383 aa12.54□□□□□ -0.4
MSH2-201ENST00000233146 CELF3Q5SZQ8 465 aaKnown RBP12.54□□□□□ -0.4
MSH2-201ENST00000233146 POF1BQ8WVV4 589 aa12.54□□□□□ -0.4
MSH2-201ENST00000233146 NKX6-2Q9C056 277 aaPredicted RBP12.54□□□□□ -0.4
MSH2-201ENST00000233146 OR51J1Q9H342 316 aa12.54□□□□□ -0.4
MSH2-201ENST00000233146 SCP2D1Q9UJQ7 156 aa12.54□□□□□ -0.4
MSH2-201ENST00000233146 SIP14410 1827 aa12.54□□□□□ -0.4
MSH2-201ENST00000233146 WDR81Q562E7 1941 aa12.54□□□□□ -0.4
MSH2-201ENST00000233146 ABCA3Q99758 1704 aa12.54□□□□□ -0.4
MSH2-201ENST00000233146 G3V3Q6 166 aa12.54□□□□□ -0.4
MSH2-201ENST00000233146 WRBO00258 174 aa12.54□□□□□ -0.4
MSH2-201ENST00000233146 MLYCDO95822 493 aa12.54□□□□□ -0.4
MSH2-201ENST00000233146 PTBP1P26599 531 aaKnown RBP eCLIP12.54□□□□□ -0.43e-8■■■■■ 62.7
MSH2-201ENST00000233146 SOX3P41225 446 aa12.54□□□□□ -0.4
MSH2-201ENST00000233146 VSX2P58304 361 aaPredicted RBP12.54□□□□□ -0.4
MSH2-201ENST00000233146 LCP2Q13094 533 aa12.54□□□□□ -0.4
MSH2-201ENST00000233146 CNIH2Q6PI25 160 aa12.54□□□□□ -0.4
MSH2-201ENST00000233146 TRMT11Q7Z4G4 463 aaKnown RBP12.54□□□□□ -0.4
MSH2-201ENST00000233146 CCDC117Q8IWD4 279 aaPredicted RBP12.54□□□□□ -0.4
MSH2-201ENST00000233146 IPMKQ8NFU5 416 aa12.54□□□□□ -0.4
MSH2-201ENST00000233146 PMM1Q92871 262 aa12.54□□□□□ -0.4
MSH2-201ENST00000233146 NIFKQ9BYG3 293 aaKnown RBP12.54□□□□□ -0.4
MSH2-201ENST00000233146 GAREM1Q9H706 876 aa12.54□□□□□ -0.4
MSH2-201ENST00000233146 ZNF275Q9NSD4 429 aaPredicted RBP12.54□□□□□ -0.4
MSH2-201ENST00000233146 MS4A12Q9NXJ0 267 aa12.54□□□□□ -0.4
MSH2-201ENST00000233146 SLC25A37Q9NYZ2 338 aa12.54□□□□□ -0.4
MSH2-201ENST00000233146 PIM2Q9P1W9 311 aa12.54□□□□□ -0.4
MSH2-201ENST00000233146 GPR160Q9UJ42 338 aa12.54□□□□□ -0.4
MSH2-201ENST00000233146 ING1Q9UK53 422 aaPredicted RBP12.54□□□□□ -0.4
MSH2-201ENST00000233146 COL5A2P05997 1499 aaPredicted RBP12.53□□□□□ -0.4
MSH2-201ENST00000233146 TTLL8A6PVC2 850 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 FAM220BPB1ANY3 271 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 PAGE1O75459 146 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 GLUD1P00367 558 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 NFKB1P19838 968 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 SFNP31947 248 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 PRMT2P55345 433 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 EEF1A1P68104 462 aaKnown RBP12.53□□□□□ -0.4
MSH2-201ENST00000233146 EEF1A2Q05639 463 aaKnown RBP12.53□□□□□ -0.4
MSH2-201ENST00000233146 LRRC32Q14392 662 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 KIAA0040Q15053 153 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 EEF1A1P5Q5VTE0 462 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 DPH6Q7L8W6 267 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 C11orf96Q7Z7L8 435 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 CALHM3Q86XJ0 350 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 CHTF18Q8WVB6 975 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 EXT2Q93063 718 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 ZNF285Q96NJ3 590 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 NUSAP1Q9BXS6 441 aaKnown RBP12.53□□□□□ -0.4
MSH2-201ENST00000233146 NIT2Q9NQR4 276 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 POLE3Q9NRF9 147 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 HEBP1Q9NRV9 189 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 SLC2A6Q9UGQ3 507 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 A0A1B0GTQ1 180 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 ARVCFO00192 962 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 RGS11O94810 467 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 AP2A2O94973 939 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 RNF224P0DH78 156 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 RAB3BP20337 219 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 TM4SF1P30408 202 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 RPS7P62081 194 aaKnown RBP12.53□□□□□ -0.4
MSH2-201ENST00000233146 MTMR1Q13613 665 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 GPR176Q14439 515 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 SCIMPQ6UWF3 145 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 TBC1D19Q8N5T2 526 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 SCRN2Q96FV2 425 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 C12orf42Q96LP6 360 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 OR2M2Q96R28 347 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 ARNT2Q9HBZ2 717 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 UBP1Q9NZI7 540 aa12.53□□□□□ -0.4
MSH2-201ENST00000233146 LSM2Q9Y333 95 aaKnown RBP12.53□□□□□ -0.4
MSH2-201ENST00000233146 MTMR11A4FU01 709 aa12.52□□□□□ -0.4
MSH2-201ENST00000233146 CRCPO75575 148 aa12.52□□□□□ -0.4
MSH2-201ENST00000233146 RASGRP1O95267 797 aa12.52□□□□□ -0.4
MSH2-201ENST00000233146 ZNF806P0C7X5 589 aa12.52□□□□□ -0.4
MSH2-201ENST00000233146 MTHFD2P13995 350 aa12.52□□□□□ -0.4
MSH2-201ENST00000233146 SDC2P34741 201 aa12.52□□□□□ -0.4
MSH2-201ENST00000233146 RFC3P40938 356 aa12.52□□□□□ -0.4
MSH2-201ENST00000233146 HSPA7P48741 367 aa12.52□□□□□ -0.4
MSH2-201ENST00000233146 GZMMP51124 257 aa12.52□□□□□ -0.4
MSH2-201ENST00000233146 EPHA4P54764 986 aa12.52□□□□□ -0.4
MSH2-201ENST00000233146 PPP3R1P63098 170 aa12.52□□□□□ -0.4
MSH2-201ENST00000233146 LGALS3BPQ08380 585 aa12.52□□□□□ -0.4
MSH2-201ENST00000233146 SERTAD2Q14140 314 aa12.52□□□□□ -0.4
MSH2-201ENST00000233146 DMC1Q14565 340 aa12.52□□□□□ -0.4
MSH2-201ENST00000233146 HECTD2Q5U5R9 776 aa12.52□□□□□ -0.4
MSH2-201ENST00000233146 STRIP1Q5VSL9 837 aa12.52□□□□□ -0.4
MSH2-201ENST00000233146 LCLAT1Q6UWP7 414 aa12.52□□□□□ -0.4
MSH2-201ENST00000233146 TRIM69Q86WT6 500 aa12.52□□□□□ -0.4
MSH2-201ENST00000233146 FTMTQ8N4E7 242 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms