RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 SLC6A11P48066 632 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 CYB561P49447 251 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 ATP12AP54707 1039 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 EVX2Q03828 476 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 KCTD19Q17RG1 926 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-218ENST00000640036 TRMT5Q32P41 509 aaKnown RBP4.85□□□□□ -1.63
SCN1A-218ENST00000640036 KCTD11Q693B1 232 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 BORAQ6PGQ7 559 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 OSTM1Q86WC4 334 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 NETO2Q8NC67 525 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 RAB39BQ96DA2 213 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 KLF6Q99612 283 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-218ENST00000640036 HDHD2Q9H0R4 259 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 CHMP1AQ9HD42 196 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-218ENST00000640036 FGF21Q9NSA1 209 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 DKK3Q9UBP4 350 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 LOC110117498-PIK3R3F6TDL0 507 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 PDPK1O15530 556 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 MT-CO1P00395 513 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 HRGP04196 525 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 CHRNEQ04844 493 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 EXT1Q16394 746 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 SWI5Q1ZZU3 235 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 ZNF571Q7Z3V5 609 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-218ENST00000640036 MRPL41Q8IXM3 137 aaKnown RBP4.85□□□□□ -1.63
SCN1A-218ENST00000640036 PM20D2Q8IYS1 436 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 CREB3L4Q8TEY5 395 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 PIK3R3Q92569 461 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 PEX11GQ96HA9 241 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 CCDC28BQ9BUN5 200 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 POT1Q9NUX5 634 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 FZD10Q9ULW2 581 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 FARSAQ9Y285 508 aaKnown RBP4.85□□□□□ -1.63
SCN1A-218ENST00000640036 SDK2Q58EX2 2172 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 BDP1A6H8Y1 2624 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 DOCK6Q96HP0 2047 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 GIMAP1-GIMAP5A0A087WTJ2 511 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 RAD1O60671 282 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 AP2A1O95782 977 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 POU3F2P20265 443 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-218ENST00000640036 CD82P27701 267 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 KHKP50053 298 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 MAGOHP61326 146 aaKnown RBP4.85□□□□□ -1.63
SCN1A-218ENST00000640036 RPL7AP62424 266 aaKnown RBP4.85□□□□□ -1.63
SCN1A-218ENST00000640036 VLDLRP98155 873 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 DLG1Q12959 904 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 RPA4Q13156 261 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 KEAP1Q14145 624 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 FAM98BQ52LJ0 330 aaKnown RBP4.85□□□□□ -1.63
SCN1A-218ENST00000640036 TNFAIP8L3Q5GJ75 292 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 SPDYCQ5MJ68 293 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 SLC2A7Q6PXP3 512 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 PLCZ1Q86YW0 608 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 LNX2Q8N448 690 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 PPP1R35Q8TAP8 253 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 TCTN2Q96GX1 697 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 SLC35G5Q96KT7 338 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 NSMCE2Q96MF7 247 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 SMOQ99835 787 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 GDF15Q99988 308 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 TMEM121BQ9BXQ6 578 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-218ENST00000640036 TLR10Q9BXR5 811 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 ZBTB20Q9HC78 741 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-218ENST00000640036 GPN1Q9HCN4 374 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-218ENST00000640036 PCDHB16Q9NRJ7 776 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 CHST7Q9NS84 486 aa4.85□□□□□ -1.63
SCN1A-218ENST00000640036 ALS2Q96Q42 1657 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 ZNFX1Q9P2E3 1918 aaKnown RBP4.84□□□□□ -1.63
SCN1A-218ENST00000640036 LOC100653049A0A140TA62 436 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 RSL1D1O76021 490 aaKnown RBP4.84□□□□□ -1.63
SCN1A-218ENST00000640036 SNRPB2P08579 225 aaKnown RBP4.84□□□□□ -1.63
SCN1A-218ENST00000640036 THRAP10827 490 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 RAB8AP61006 207 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 TAF5Q15542 800 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 GPR141Q7Z602 305 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 TEX47Q8TBZ9 253 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 ISG20Q96AZ6 181 aaKnown RBP4.84□□□□□ -1.63
SCN1A-218ENST00000640036 PAAF1Q9BRP4 392 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 AGXT2Q9BYV1 514 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 YIPF3Q9GZM5 350 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 REEP1Q9H902 201 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 THUMPD1Q9NXG2 353 aaKnown RBP4.84□□□□□ -1.63
SCN1A-218ENST00000640036 LHX6Q9UPM6 363 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 SLC5A6Q9Y289 635 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 MTO1Q9Y2Z2 717 aaKnown RBP4.84□□□□□ -1.63
SCN1A-218ENST00000640036 MEMO1Q9Y316 297 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 MED31Q9Y3C7 131 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 MAGED1Q9Y5V3 778 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-218ENST00000640036 CACNA1IQ9P0X4 2223 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 WNK2Q9Y3S1 2297 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 HCN1O60741 890 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 GOT2P00505 430 aaKnown RBP4.84□□□□□ -1.63
SCN1A-218ENST00000640036 S100A2P29034 98 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 SLC5A2P31639 672 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 KCNC1P48547 511 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 HSPA7P48741 367 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 LGALS4P56470 323 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 IRF9Q00978 393 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 RHDQ02161 417 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 OASLQ15646 514 aaKnown RBP4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms