RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-223ENST00000637823 HACD2Q6Y1H2 254 aa11.23□□□□□ -0.61
CLN6-223ENST00000637823 RNF44Q7L0R7 432 aa11.23□□□□□ -0.61
CLN6-223ENST00000637823 UBE3DQ7Z6J8 389 aa11.23□□□□□ -0.61
CLN6-223ENST00000637823 ASPGQ86U10 573 aa11.23□□□□□ -0.61
CLN6-223ENST00000637823 PLXDC1Q8IUK5 500 aa11.23□□□□□ -0.61
CLN6-223ENST00000637823 RIMKLAQ8IXN7 391 aa11.23□□□□□ -0.61
CLN6-223ENST00000637823 EID2Q8N6I1 236 aa11.23□□□□□ -0.61
CLN6-223ENST00000637823 ZNF655Q8N720 491 aaPredicted RBP11.23□□□□□ -0.61
CLN6-223ENST00000637823 C19orf47Q8N9M1 422 aaKnown RBP11.23□□□□□ -0.61
CLN6-223ENST00000637823 CAMKVQ8NCB2 501 aa11.23□□□□□ -0.61
CLN6-223ENST00000637823 OR2L5Q8NG80 312 aa11.23□□□□□ -0.61
CLN6-223ENST00000637823 OR2I1PQ8NGU4 316 aa11.23□□□□□ -0.61
CLN6-223ENST00000637823 FBXO27Q8NI29 283 aa11.23□□□□□ -0.61
CLN6-223ENST00000637823 STARD8Q92502 1023 aa11.23□□□□□ -0.61
CLN6-223ENST00000637823 RERGQ96A58 199 aaPredicted RBP11.23□□□□□ -0.61
CLN6-223ENST00000637823 TESCQ96BS2 214 aa11.23□□□□□ -0.61
CLN6-223ENST00000637823 MS4A6EQ96DS6 147 aa11.23□□□□□ -0.61
CLN6-223ENST00000637823 TCTN2Q96GX1 697 aa11.23□□□□□ -0.61
CLN6-223ENST00000637823 EGLN2Q96KS0 407 aa11.23□□□□□ -0.61
CLN6-223ENST00000637823 PPM1MQ96MI6 270 aa11.23□□□□□ -0.61
CLN6-223ENST00000637823 EBPLQ9BY08 206 aa11.23□□□□□ -0.61
CLN6-223ENST00000637823 SLC6A16Q9GZN6 736 aa11.23□□□□□ -0.61
CLN6-223ENST00000637823 KLHL25Q9H0H3 589 aa11.23□□□□□ -0.61
CLN6-223ENST00000637823 KLHL31Q9H511 634 aa11.23□□□□□ -0.61
CLN6-223ENST00000637823 DDX31Q9H8H2 851 aaKnown RBP11.23□□□□□ -0.61
CLN6-223ENST00000637823 PCDHGB2Q9Y5G2 931 aa11.23□□□□□ -0.61
CLN6-223ENST00000637823 LY6G6EA0A0G2JKS1 128 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 A0A0J9YVX5 310 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 ARHGAP10A1A4S6 786 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 EME2A4GXA9 379 aaPredicted RBP11.22□□□□□ -0.61
CLN6-223ENST00000637823 URADA6NGE7 173 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 H0YGG7 62 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 MRASO14807 208 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 MAP3K7O43318 606 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 DUX1O43812 170 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 EEDO75530 441 aaKnown RBP11.22□□□□□ -0.61
CLN6-223ENST00000637823 KLHL18O94889 574 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 NPPAP01160 153 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 C9P02748 559 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 RETP07949 1114 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 SLC35G6P0C7Q6 338 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 MYF5P13349 255 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 NQO1P15559 274 aaKnown RBP11.22□□□□□ -0.61
CLN6-223ENST00000637823 CAPN3P20807 821 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 CD1CP29017 333 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 TPP2P29144 1249 aaPredicted RBP11.22□□□□□ -0.61
CLN6-223ENST00000637823 TSFMP43897 325 aaKnown RBP11.22□□□□□ -0.61
CLN6-223ENST00000637823 NUDT2P50583 147 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 DUSP3P51452 185 aaPredicted RBP11.22□□□□□ -0.61
CLN6-223ENST00000637823 ATXN3P54252 364 aaPredicted RBP11.22□□□□□ -0.61
CLN6-223ENST00000637823 CORO7P57737 925 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 ARF3P61204 181 aaPredicted RBP11.22□□□□□ -0.61
CLN6-223ENST00000637823 TRA2BP62995 288 aaKnown RBP11.22□□□□□ -0.61
CLN6-223ENST00000637823 SLC25A3Q00325 362 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 SRSF11Q05519 484 aaKnown RBP11.22□□□□□ -0.61
CLN6-223ENST00000637823 ZNF763Q0D2J5 394 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 TLR1Q15399 786 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 CCDC6Q16204 474 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 DPY19L1Q2PZI1 675 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 NKAIN2Q5VXU1 208 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 REP15Q6BDI9 236 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 TRIM40Q6P9F5 258 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 WDR74Q6RFH5 385 aaPredicted RBP11.22□□□□□ -0.61
CLN6-223ENST00000637823 C16orf89Q6UX73 402 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 FAM92BQ6ZTR7 304 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 VN1R4Q7Z5H5 301 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 DSELQ8IZU8 1212 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 DNAJC22Q8N4W6 341 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 MINDY1Q8N5J2 469 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 KRTCAP2Q8N6L1 136 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 Q8N9G6 341 aaPredicted RBP11.22□□□□□ -0.61
CLN6-223ENST00000637823 CLHC1Q8NHS4 586 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.22□□□□□ -0.61
CLN6-223ENST00000637823 C16orf78Q8WTQ4 265 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 NAT6Q93015 286 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 CCDC74AQ96AQ1 378 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 ROPN1LQ96C74 230 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 TGM7Q96PF1 710 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 KCNC2Q96PR1 638 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 RAB3IPQ96QF0 476 aaPredicted RBP11.22□□□□□ -0.61
CLN6-223ENST00000637823 PRPF18Q99633 342 aaKnown RBP11.22□□□□□ -0.61
CLN6-223ENST00000637823 NPAS2Q99743 824 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 MAP3K3Q99759 626 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 PRRX2Q99811 253 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 TBCDQ9BTW9 1192 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 ZNF717Q9BY31 904 aaPredicted RBP11.22□□□□□ -0.61
CLN6-223ENST00000637823 CADM1Q9BY67 442 aaKnown RBP11.22□□□□□ -0.61
CLN6-223ENST00000637823 AICDAQ9GZX7 198 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 MMADHCQ9H3L0 296 aaPredicted RBP11.22□□□□□ -0.61
CLN6-223ENST00000637823 MYNNQ9NPC7 610 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 GID8Q9NWU2 228 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 LEF1Q9UJU2 399 aaPredicted RBP11.22□□□□□ -0.61
CLN6-223ENST00000637823 RRP15Q9Y3B9 282 aaKnown RBP11.22□□□□□ -0.61
CLN6-223ENST00000637823 U3KQA8 63 aa11.22□□□□□ -0.61
CLN6-223ENST00000637823 LOC105369274A0A096LPK9 316 aa11.21□□□□□ -0.61
CLN6-223ENST00000637823 LOC102723532A0A0G2JNH3 316 aa11.21□□□□□ -0.61
CLN6-223ENST00000637823 CPED1A4D0V7 1026 aa11.21□□□□□ -0.61
CLN6-223ENST00000637823 C9JVG2 144 aa11.21□□□□□ -0.61
CLN6-223ENST00000637823 TXNDC9O14530 226 aa11.21□□□□□ -0.61
CLN6-223ENST00000637823 ZSCAN9O15535 394 aaPredicted RBP11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 103.7 ms