RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 DNAJB6O75190 326 aa13.5□□□□□ -0.25
CLN3-249ENST00000636685 F12P00748 615 aaPredicted RBP13.5□□□□□ -0.25
CLN3-249ENST00000636685 APOC2P02655 101 aa13.5□□□□□ -0.25
CLN3-249ENST00000636685 FHP07954 510 aa13.5□□□□□ -0.25
CLN3-249ENST00000636685 MAN2A2P49641 1150 aa13.5□□□□□ -0.25
CLN3-249ENST00000636685 ZBED6P86452 979 aa13.5□□□□□ -0.25
CLN3-249ENST00000636685 PTRHD1Q6GMV3 140 aaKnown RBP13.5□□□□□ -0.25
CLN3-249ENST00000636685 BBS12Q6ZW61 710 aa13.5□□□□□ -0.25
CLN3-249ENST00000636685 FAM109AQ8N4B1 249 aa13.5□□□□□ -0.25
CLN3-249ENST00000636685 KCT2Q8NC54 265 aa13.5□□□□□ -0.25
CLN3-249ENST00000636685 OR4L1Q8NH43 312 aa13.5□□□□□ -0.25
CLN3-249ENST00000636685 SARAFQ96BY9 339 aa13.5□□□□□ -0.25
CLN3-249ENST00000636685 PERPQ96FX8 193 aa13.5□□□□□ -0.25
CLN3-249ENST00000636685 CAPZA3Q96KX2 299 aa13.5□□□□□ -0.25
CLN3-249ENST00000636685 OR1F2PQ96R84 312 aa13.5□□□□□ -0.25
CLN3-249ENST00000636685 PIP5K1AQ99755 562 aa13.5□□□□□ -0.25
CLN3-249ENST00000636685 FERMT1Q9BQL6 677 aa13.5□□□□□ -0.25
CLN3-249ENST00000636685 SPRR3Q9UBC9 169 aa13.5□□□□□ -0.25
CLN3-249ENST00000636685 FOXD3Q9UJU5 478 aaPredicted RBP13.5□□□□□ -0.25
CLN3-249ENST00000636685 ATP6AP2A0A1C7CYW4 349 aa13.49□□□□□ -0.25
CLN3-249ENST00000636685 KDM4EB2RXH2 506 aaPredicted RBP13.49□□□□□ -0.25
CLN3-249ENST00000636685 PRMT5O14744 637 aaPredicted RBP13.49□□□□□ -0.25
CLN3-249ENST00000636685 ATP6AP2O75787 350 aa13.49□□□□□ -0.25
CLN3-249ENST00000636685 STK10O94804 968 aaKnown RBP13.49□□□□□ -0.25
CLN3-249ENST00000636685 GOSR1O95249 250 aa13.49□□□□□ -0.25
CLN3-249ENST00000636685 GABRA1P14867 456 aa13.49□□□□□ -0.25
CLN3-249ENST00000636685 ENDOUP21128 410 aaKnown RBP13.49□□□□□ -0.25
CLN3-249ENST00000636685 IL10P22301 178 aa13.49□□□□□ -0.25
CLN3-249ENST00000636685 SLC1A1P43005 524 aa13.49□□□□□ -0.25
CLN3-249ENST00000636685 SSR4P51571 173 aa13.49□□□□□ -0.25
CLN3-249ENST00000636685 PNLIPRP1P54315 467 aa13.49□□□□□ -0.25
CLN3-249ENST00000636685 WNT3P56703 355 aa13.49□□□□□ -0.25
CLN3-249ENST00000636685 BTG2P78543 158 aa13.49□□□□□ -0.25
CLN3-249ENST00000636685 HYAL2Q12891 473 aa13.49□□□□□ -0.25
CLN3-249ENST00000636685 NR1I3Q14994 352 aa13.49□□□□□ -0.25
CLN3-249ENST00000636685 ANKRD20A4Q4UJ75 823 aa13.49□□□□□ -0.25
CLN3-249ENST00000636685 FASTKD1Q53R41 847 aaKnown RBP13.49□□□□□ -0.25
CLN3-249ENST00000636685 NDUFAF5Q5TEU4 345 aa13.49□□□□□ -0.25
CLN3-249ENST00000636685 PODNL1Q6PEZ8 512 aa13.49□□□□□ -0.25
CLN3-249ENST00000636685 POMZP3Q6PJE2 187 aa13.49□□□□□ -0.25
CLN3-249ENST00000636685 KIAA0408Q6ZU52 694 aa13.49□□□□□ -0.25
CLN3-249ENST00000636685 OTOAQ7RTW8 1153 aa13.49□□□□□ -0.25
CLN3-249ENST00000636685 KIF18BQ86Y91 864 aa13.49□□□□□ -0.25
CLN3-249ENST00000636685 CDKL3Q8IVW4 592 aaPredicted RBP13.49□□□□□ -0.25
CLN3-249ENST00000636685 APCDD1LQ8NCL9 501 aa13.49□□□□□ -0.25
CLN3-249ENST00000636685 TNIP2Q8NFZ5 429 aa13.49□□□□□ -0.25
CLN3-249ENST00000636685 OR6P1Q8NGX9 317 aa13.49□□□□□ -0.25
CLN3-249ENST00000636685 ACTL9Q8TC94 416 aa13.49□□□□□ -0.25
CLN3-249ENST00000636685 TBC1D20Q96BZ9 403 aa13.49□□□□□ -0.25
CLN3-249ENST00000636685 PTCHD1Q96NR3 888 aa13.49□□□□□ -0.25
CLN3-249ENST00000636685 PPP1R2P1Q96PQ5 205 aa13.49□□□□□ -0.25
CLN3-249ENST00000636685 PKP4Q99569 1192 aa13.49□□□□□ -0.25
CLN3-249ENST00000636685 LDAHQ9H6V9 325 aa13.49□□□□□ -0.25
CLN3-249ENST00000636685 ABCA1O95477 2261 aa13.49□□□□□ -0.25
CLN3-249ENST00000636685 HEATR5AQ86XA9 2040 aa13.48□□□□□ -0.25
CLN3-249ENST00000636685 MACROD2A1Z1Q3 448 aa13.48□□□□□ -0.25
CLN3-249ENST00000636685 A8MVJ9 347 aa13.48□□□□□ -0.25
CLN3-249ENST00000636685 MYO1CO00159 1063 aa13.48□□□□□ -0.25
CLN3-249ENST00000636685 SMAPO00193 183 aa13.48□□□□□ -0.25
CLN3-249ENST00000636685 SUSD5O60279 629 aa13.48□□□□□ -0.25
CLN3-249ENST00000636685 KIF5CO60282 957 aa13.48□□□□□ -0.25
CLN3-249ENST00000636685 MATN4O95460 622 aa13.48□□□□□ -0.25
CLN3-249ENST00000636685 RBP3P10745 1247 aa13.48□□□□□ -0.25
CLN3-249ENST00000636685 CTNNA2P26232 953 aa13.48□□□□□ -0.25
CLN3-249ENST00000636685 MARCKSL1P49006 195 aa13.48□□□□□ -0.25
CLN3-249ENST00000636685 OLR1P78380 273 aa13.48□□□□□ -0.25
CLN3-249ENST00000636685 ABATP80404 500 aa13.48□□□□□ -0.25
CLN3-249ENST00000636685 KRTAP1-1Q07627 177 aa13.48□□□□□ -0.25
CLN3-249ENST00000636685 SLC18A3Q16572 532 aa13.48□□□□□ -0.25
CLN3-249ENST00000636685 CCDC181Q5TID7 509 aa13.48□□□□□ -0.25
CLN3-249ENST00000636685 DARS2Q6PI48 645 aaKnown RBP13.48□□□□□ -0.25
CLN3-249ENST00000636685 IL20RBQ6UXL0 311 aa13.48□□□□□ -0.25
CLN3-249ENST00000636685 ZNF778Q96MU6 729 aa13.48□□□□□ -0.25
CLN3-249ENST00000636685 PANX3Q96QZ0 392 aa13.48□□□□□ -0.25
CLN3-249ENST00000636685 EBNA1BP2Q99848 306 aaKnown RBP13.48□□□□□ -0.25
CLN3-249ENST00000636685 EXO5Q9H790 373 aa13.48□□□□□ -0.25
CLN3-249ENST00000636685 LRRC40Q9H9A6 602 aa13.48□□□□□ -0.25
CLN3-249ENST00000636685 LIN28AQ9H9Z2 209 aaKnown RBP13.48□□□□□ -0.25
CLN3-249ENST00000636685 HPF1Q9NWY4 346 aa13.48□□□□□ -0.25
CLN3-249ENST00000636685 MARCH4Q9P2E8 410 aaPredicted RBP13.48□□□□□ -0.25
CLN3-249ENST00000636685 ZNF223Q9UK11 482 aaPredicted RBP13.48□□□□□ -0.25
CLN3-249ENST00000636685 PCDHA3Q9Y5H8 950 aa13.48□□□□□ -0.25
CLN3-249ENST00000636685 KCNE1BA0A087WTH5 132 aa13.47□□□□□ -0.25
CLN3-249ENST00000636685 MBD3L4A6NDZ8 208 aaPredicted RBP13.47□□□□□ -0.25
CLN3-249ENST00000636685 MBD3L5A6NJ08 208 aaPredicted RBP13.47□□□□□ -0.25
CLN3-249ENST00000636685 E7ENX8 843 aa13.47□□□□□ -0.25
CLN3-249ENST00000636685 CES2O00748 559 aa13.47□□□□□ -0.25
CLN3-249ENST00000636685 PSTPIP1O43586 416 aa13.47□□□□□ -0.25
CLN3-249ENST00000636685 PRKNO60260 465 aaPredicted RBP13.47□□□□□ -0.25
CLN3-249ENST00000636685 OR6B1O95007 311 aa13.47□□□□□ -0.25
CLN3-249ENST00000636685 METTL18O95568 372 aa13.47□□□□□ -0.25
CLN3-249ENST00000636685 CNOT4O95628 575 aaKnown RBP13.47□□□□□ -0.25
CLN3-249ENST00000636685 NID1P14543 1247 aa13.47□□□□□ -0.25
CLN3-249ENST00000636685 PTMSP20962 102 aa13.47□□□□□ -0.25
CLN3-249ENST00000636685 MAOAP21397 527 aa13.47□□□□□ -0.25
CLN3-249ENST00000636685 CEACAM8P31997 349 aaPredicted RBP13.47□□□□□ -0.25
CLN3-249ENST00000636685 PPARGP37231 505 aaPredicted RBP13.47□□□□□ -0.25
CLN3-249ENST00000636685 CLCN2P51788 898 aa13.47□□□□□ -0.25
CLN3-249ENST00000636685 EIF3EP60228 445 aaKnown RBP13.47□□□□□ -0.25
CLN3-249ENST00000636685 RPS15AP62244 130 aaKnown RBP13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms