RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 EEF1DP29692 281 aaKnown RBP17.32■□□□□ 0.36
CLN3-241ENST00000635861 FRG1Q14331 258 aaKnown RBP17.32■□□□□ 0.36
CLN3-241ENST00000635861 CSHL1Q14406 222 aa17.32■□□□□ 0.36
CLN3-241ENST00000635861 MORF4L2Q15014 288 aa17.32■□□□□ 0.36
CLN3-241ENST00000635861 HECTD2Q5U5R9 776 aa17.32■□□□□ 0.36
CLN3-241ENST00000635861 BNC2Q6ZN30 1099 aaPredicted RBP17.32■□□□□ 0.36
CLN3-241ENST00000635861 QSOX2Q6ZRP7 698 aa17.32■□□□□ 0.36
CLN3-241ENST00000635861 SYDE1Q6ZW31 735 aaPredicted RBP17.32■□□□□ 0.36
CLN3-241ENST00000635861 SLC35F6Q8N357 371 aa17.32■□□□□ 0.36
CLN3-241ENST00000635861 SLC5A11Q8WWX8 675 aa17.32■□□□□ 0.36
CLN3-241ENST00000635861 CCDC120Q96HB5 630 aa17.32■□□□□ 0.36
CLN3-241ENST00000635861 RUNDC3BQ96NL0 473 aa17.32■□□□□ 0.36
CLN3-241ENST00000635861 PELI2Q9HAT8 420 aa17.32■□□□□ 0.36
CLN3-241ENST00000635861 CHST11Q9NPF2 352 aa17.32■□□□□ 0.36
CLN3-241ENST00000635861 CD96P40200 585 aa17.31■□□□□ 0.36
CLN3-241ENST00000635861 SCTRP47872 440 aa17.31■□□□□ 0.36
CLN3-241ENST00000635861 OR4D2P58180 307 aa17.31■□□□□ 0.36
CLN3-241ENST00000635861 SLC26A5P58743 744 aa17.31■□□□□ 0.36
CLN3-241ENST00000635861 ILF2Q12905 390 aaKnown RBP17.31■□□□□ 0.36
CLN3-241ENST00000635861 OR1C1Q15619 314 aa17.31■□□□□ 0.36
CLN3-241ENST00000635861 ZXDCQ2QGD7 858 aaPredicted RBP17.31■□□□□ 0.36
CLN3-241ENST00000635861 BBS9Q3SYG4 887 aa17.31■□□□□ 0.36
CLN3-241ENST00000635861 MSS51Q4VC12 460 aa17.31■□□□□ 0.36
CLN3-241ENST00000635861 XKRXQ6PP77 449 aa17.31■□□□□ 0.36
CLN3-241ENST00000635861 TRPV3Q8NET8 790 aa17.31■□□□□ 0.36
CLN3-241ENST00000635861 ELP5Q8TE02 316 aa17.31■□□□□ 0.36
CLN3-241ENST00000635861 PYCR2Q96C36 320 aa17.31■□□□□ 0.36
CLN3-241ENST00000635861 MOCOSQ96EN8 888 aa17.31■□□□□ 0.36
CLN3-241ENST00000635861 GPR137Q96N19 417 aa17.31■□□□□ 0.36
CLN3-241ENST00000635861 OR4K3Q96R72 315 aa17.31■□□□□ 0.36
CLN3-241ENST00000635861 PPANQ9NQ55 473 aaKnown RBP17.31■□□□□ 0.36
CLN3-241ENST00000635861 ARHGAP10A1A4S6 786 aa17.3■□□□□ 0.36
CLN3-241ENST00000635861 GABRR3A8MPY1 467 aa17.3■□□□□ 0.36
CLN3-241ENST00000635861 SLC19A2O60779 497 aa17.3■□□□□ 0.36
CLN3-241ENST00000635861 TCP1P17987 556 aaKnown RBP17.3■□□□□ 0.36
CLN3-241ENST00000635861 PTGER4P35408 488 aa17.3■□□□□ 0.36
CLN3-241ENST00000635861 CDKL1Q00532 357 aa17.3■□□□□ 0.36
CLN3-241ENST00000635861 ALDH6A1Q02252 535 aaKnown RBP17.3■□□□□ 0.36
CLN3-241ENST00000635861 DEFB134Q4QY38 66 aa17.3■□□□□ 0.36
CLN3-241ENST00000635861 FCRLBQ6BAA4 426 aa17.3■□□□□ 0.36
CLN3-241ENST00000635861 SBSNQ6UWP8 590 aa17.3■□□□□ 0.36
CLN3-241ENST00000635861 Q6ZPB1 254 aaPredicted RBP17.3■□□□□ 0.36
CLN3-241ENST00000635861 MRGPRGQ86SM5 289 aa17.3■□□□□ 0.36
CLN3-241ENST00000635861 NKAPQ8N5F7 415 aaKnown RBP17.3■□□□□ 0.36
CLN3-241ENST00000635861 NEIL2Q969S2 332 aa17.3■□□□□ 0.36
CLN3-241ENST00000635861 SIGLEC12Q96PQ1 595 aa17.3■□□□□ 0.36
CLN3-241ENST00000635861 NPAS2Q99743 824 aa17.3■□□□□ 0.36
CLN3-241ENST00000635861 AIF1LQ9BQI0 150 aa17.3■□□□□ 0.36
CLN3-241ENST00000635861 DDX47Q9H0S4 455 aaKnown RBP17.3■□□□□ 0.36
CLN3-241ENST00000635861 ZNF835Q9Y2P0 537 aa17.3■□□□□ 0.36
CLN3-241ENST00000635861 DYRK1BQ9Y463 629 aa17.3■□□□□ 0.36
CLN3-241ENST00000635861 CSMD1Q96PZ7 3565 aa17.3■□□□□ 0.36
CLN3-241ENST00000635861 OTOGQ6ZRI0 2925 aa17.3■□□□□ 0.36
CLN3-241ENST00000635861 OR2W5A6NFC9 320 aa17.3■□□□□ 0.36
CLN3-241ENST00000635861 ZNF860A6NHJ4 632 aa17.3■□□□□ 0.36
CLN3-241ENST00000635861 CHST10O43529 356 aa17.3■□□□□ 0.36
CLN3-241ENST00000635861 BANF1O75531 89 aa17.3■□□□□ 0.36
CLN3-241ENST00000635861 CDC123O75794 336 aaPredicted RBP17.3■□□□□ 0.36
CLN3-241ENST00000635861 ZNF37AP17032 561 aaPredicted RBP17.3■□□□□ 0.36
CLN3-241ENST00000635861 IVDP26440 423 aa17.3■□□□□ 0.36
CLN3-241ENST00000635861 REEP5Q00765 189 aa17.3■□□□□ 0.36
CLN3-241ENST00000635861 PPP1R3AQ16821 1122 aa17.3■□□□□ 0.36
CLN3-241ENST00000635861 STEAP4Q687X5 459 aa17.3■□□□□ 0.36
CLN3-241ENST00000635861 OR5T3Q8NGG3 340 aa17.3■□□□□ 0.36
CLN3-241ENST00000635861 TSLPQ969D9 159 aa17.3■□□□□ 0.36
CLN3-241ENST00000635861 MAGED4Q96JG8 741 aa17.3■□□□□ 0.36
CLN3-241ENST00000635861 SLC6A16Q9GZN6 736 aa17.3■□□□□ 0.36
CLN3-241ENST00000635861 KCNE2Q9Y6J6 123 aa17.3■□□□□ 0.36
CLN3-241ENST00000635861 NDC80O14777 642 aa17.29■□□□□ 0.36
CLN3-241ENST00000635861 PRMT3O60678 531 aa17.29■□□□□ 0.36
CLN3-241ENST00000635861 GUCA1CO95843 209 aa17.29■□□□□ 0.36
CLN3-241ENST00000635861 SP1P08047 785 aa17.29■□□□□ 0.36
CLN3-241ENST00000635861 ZNF888P0CJ79 500 aaPredicted RBP17.29■□□□□ 0.36
CLN3-241ENST00000635861 ELK3P41970 407 aa17.29■□□□□ 0.36
CLN3-241ENST00000635861 HNMTP50135 292 aa17.29■□□□□ 0.36
CLN3-241ENST00000635861 PMP22Q01453 160 aa17.29■□□□□ 0.36
CLN3-241ENST00000635861 ZNF630Q2M218 657 aaPredicted RBP17.29■□□□□ 0.36
CLN3-241ENST00000635861 CATSPEREQ5SY80 951 aa17.29■□□□□ 0.36
CLN3-241ENST00000635861 SLC25A25Q6KCM7 469 aa17.29■□□□□ 0.36
CLN3-241ENST00000635861 RPS19BP1Q86WX3 136 aaKnown RBP17.29■□□□□ 0.36
CLN3-241ENST00000635861 IGDCC3Q8IVU1 814 aa17.29■□□□□ 0.36
CLN3-241ENST00000635861 SHISA5Q8N114 240 aa17.29■□□□□ 0.36
CLN3-241ENST00000635861 AMER2Q8N7J2 671 aa17.29■□□□□ 0.36
CLN3-241ENST00000635861 ARMC2Q8NEN0 867 aa17.29■□□□□ 0.36
CLN3-241ENST00000635861 UTP15Q8TED0 518 aaKnown RBP17.29■□□□□ 0.36
CLN3-241ENST00000635861 FRMD6Q96NE9 622 aa17.29■□□□□ 0.36
CLN3-241ENST00000635861 RBCK1Q9BYM8 510 aa17.29■□□□□ 0.36
CLN3-241ENST00000635861 TRIM45Q9H8W5 580 aaPredicted RBP17.29■□□□□ 0.36
CLN3-241ENST00000635861 PLAC1Q9HBJ0 212 aa17.29■□□□□ 0.36
CLN3-241ENST00000635861 ZFATQ9P243 1243 aa17.29■□□□□ 0.36
CLN3-241ENST00000635861 LRFN1Q9P244 771 aa17.29■□□□□ 0.36
CLN3-241ENST00000635861 TEX264Q9Y6I9 313 aa17.29■□□□□ 0.36
CLN3-241ENST00000635861 PDZD2O15018 2839 aa17.28■□□□□ 0.36
CLN3-241ENST00000635861 TCRBV16S1A1N1A0A5B0 115 aa17.28■□□□□ 0.36
CLN3-241ENST00000635861 SYNDIG1LA6NDD5 238 aa17.28■□□□□ 0.36
CLN3-241ENST00000635861 SAGE2PA6NJ88 616 aa17.28■□□□□ 0.36
CLN3-241ENST00000635861 PSMD12O00232 456 aaPredicted RBP17.28■□□□□ 0.36
CLN3-241ENST00000635861 NEURL1O76050 574 aa17.28■□□□□ 0.36
CLN3-241ENST00000635861 SERPIND1P05546 499 aa17.28■□□□□ 0.36
CLN3-241ENST00000635861 SERPINA6P08185 405 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms