RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 PRSS58Q8IYP2 241 aa19.62■□□□□ 0.73
CLN3-240ENST00000631023 RIBC1Q8N443 379 aaPredicted RBP19.62■□□□□ 0.73
CLN3-240ENST00000631023 EXD3Q8N9H8 876 aa19.62■□□□□ 0.73
CLN3-240ENST00000631023 FER1L6-AS2Q96M78 137 aa19.62■□□□□ 0.73
CLN3-240ENST00000631023 ING2Q9H160 280 aa19.62■□□□□ 0.73
CLN3-240ENST00000631023 RHBGQ9H310 441 aa19.62■□□□□ 0.73
CLN3-240ENST00000631023 TMEM216Q9P0N5 145 aa19.62■□□□□ 0.73
CLN3-240ENST00000631023 RAB21Q9UL25 225 aa19.62■□□□□ 0.73
CLN3-240ENST00000631023 ZNF490Q9ULM2 529 aaPredicted RBP19.62■□□□□ 0.73
CLN3-240ENST00000631023 TLN1Q9Y490 2541 aaKnown RBP19.62■□□□□ 0.73
CLN3-240ENST00000631023 A0A1W2PPM1 405 aa19.61■□□□□ 0.73
CLN3-240ENST00000631023 TLDC2A0PJX2 215 aa19.61■□□□□ 0.73
CLN3-240ENST00000631023 E2F3O00716 465 aa19.61■□□□□ 0.73
CLN3-240ENST00000631023 CD22P20273 847 aa19.61■□□□□ 0.73
CLN3-240ENST00000631023 EEF1DP29692 281 aaKnown RBP19.61■□□□□ 0.73
CLN3-240ENST00000631023 MAT1AQ00266 395 aaKnown RBP19.61■□□□□ 0.73
CLN3-240ENST00000631023 KCNAB2Q13303 367 aa19.61■□□□□ 0.73
CLN3-240ENST00000631023 RBBP7Q16576 425 aa19.61■□□□□ 0.73
CLN3-240ENST00000631023 SYT16Q17RD7 645 aa19.61■□□□□ 0.73
CLN3-240ENST00000631023 DEFB134Q4QY38 66 aa19.61■□□□□ 0.73
CLN3-240ENST00000631023 TOR1AIP1Q5JTV8 583 aa19.61■□□□□ 0.73
CLN3-240ENST00000631023 LIPJQ5W064 366 aa19.61■□□□□ 0.73
CLN3-240ENST00000631023 MED27Q6P2C8 311 aa19.61■□□□□ 0.73
CLN3-240ENST00000631023 PPP1R32Q7Z5V6 425 aa19.61■□□□□ 0.73
CLN3-240ENST00000631023 OR51Q1Q8NH59 317 aa19.61■□□□□ 0.73
CLN3-240ENST00000631023 UTP15Q8TED0 518 aaKnown RBP19.61■□□□□ 0.73
CLN3-240ENST00000631023 IPPKQ9H8X2 491 aa19.61■□□□□ 0.73
CLN3-240ENST00000631023 CLK4Q9HAZ1 481 aaKnown RBP19.61■□□□□ 0.73
CLN3-240ENST00000631023 P4HTMQ9NXG6 502 aa19.61■□□□□ 0.73
CLN3-240ENST00000631023 C3orf18Q9UK00 162 aa19.61■□□□□ 0.73
CLN3-240ENST00000631023 MKRN2OSH3BPM6 223 aa19.61■□□□□ 0.73
CLN3-240ENST00000631023 FFAR3O14843 346 aa19.61■□□□□ 0.73
CLN3-240ENST00000631023 GPR42O15529 346 aa19.61■□□□□ 0.73
CLN3-240ENST00000631023 UGDHO60701 494 aa19.61■□□□□ 0.73
CLN3-240ENST00000631023 GALR3O60755 368 aaPredicted RBP19.61■□□□□ 0.73
CLN3-240ENST00000631023 IL10P22301 178 aa19.61■□□□□ 0.73
CLN3-240ENST00000631023 CCT5P48643 541 aa19.61■□□□□ 0.73
CLN3-240ENST00000631023 EMP2P54851 167 aa19.61■□□□□ 0.73
CLN3-240ENST00000631023 SNRPNP63162 240 aaKnown RBP19.61■□□□□ 0.73
CLN3-240ENST00000631023 HYAL2Q12891 473 aa19.61■□□□□ 0.73
CLN3-240ENST00000631023 GRHL2Q6ISB3 625 aa19.61■□□□□ 0.73
CLN3-240ENST00000631023 GOLGA7Q7Z5G4 137 aa19.61■□□□□ 0.73
CLN3-240ENST00000631023 PDSS2Q86YH6 399 aa19.61■□□□□ 0.73
CLN3-240ENST00000631023 MYLK4Q86YV6 388 aaPredicted RBP19.61■□□□□ 0.73
CLN3-240ENST00000631023 TMEM151AQ8N4L1 468 aa19.61■□□□□ 0.73
CLN3-240ENST00000631023 ATP6V1E2Q96A05 226 aa19.61■□□□□ 0.73
CLN3-240ENST00000631023 FAR2Q96K12 515 aa19.61■□□□□ 0.73
CLN3-240ENST00000631023 ROPN1BQ9BZX4 212 aaPredicted RBP19.61■□□□□ 0.73
CLN3-240ENST00000631023 ACTR8Q9H981 624 aa19.61■□□□□ 0.73
CLN3-240ENST00000631023 ROPN1Q9HAT0 212 aaPredicted RBP19.61■□□□□ 0.73
CLN3-240ENST00000631023 ADGRE2Q9UHX3 823 aa19.61■□□□□ 0.73
CLN3-240ENST00000631023 LRIT2A6NDA9 550 aa19.6■□□□□ 0.73
CLN3-240ENST00000631023 LRRC14BA6NHZ5 514 aa19.6■□□□□ 0.73
CLN3-240ENST00000631023 AGPSO00116 658 aa19.6■□□□□ 0.73
CLN3-240ENST00000631023 PCDH17O14917 1159 aa19.6■□□□□ 0.73
CLN3-240ENST00000631023 RDH16O75452 317 aa19.6■□□□□ 0.73
CLN3-240ENST00000631023 BMP10O95393 424 aa19.6■□□□□ 0.73
CLN3-240ENST00000631023 HEXBP07686 556 aa19.6■□□□□ 0.73
CLN3-240ENST00000631023 SERPINB1P30740 379 aa19.6■□□□□ 0.73
CLN3-240ENST00000631023 LAPTM4BQ86VI4 370 aa19.6■□□□□ 0.73
CLN3-240ENST00000631023 LAS2Q8IYD9 372 aa19.6■□□□□ 0.73
CLN3-240ENST00000631023 CYP4X1Q8N118 509 aa19.6■□□□□ 0.73
CLN3-240ENST00000631023 MREGQ8N565 214 aa19.6■□□□□ 0.73
CLN3-240ENST00000631023 OR2W6PQ8NHA6 318 aa19.6■□□□□ 0.73
CLN3-240ENST00000631023 GAL3ST3Q96A11 431 aa19.6■□□□□ 0.73
CLN3-240ENST00000631023 KLHL31Q9H511 634 aa19.6■□□□□ 0.73
CLN3-240ENST00000631023 HCN3Q9P1Z3 774 aa19.6■□□□□ 0.73
CLN3-240ENST00000631023 PCDHGA11Q9Y5H2 935 aa19.6■□□□□ 0.73
CLN3-240ENST00000631023 CNTRLQ7Z7A1 2325 aa19.6■□□□□ 0.73
CLN3-240ENST00000631023 A0A088AWK7 358 aa19.59■□□□□ 0.73
CLN3-240ENST00000631023 IDSB3KWA1 339 aa19.59■□□□□ 0.73
CLN3-240ENST00000631023 GLRA3O75311 464 aa19.59■□□□□ 0.73
CLN3-240ENST00000631023 SBK3P0C264 359 aa19.59■□□□□ 0.73
CLN3-240ENST00000631023 SMIM10L1P0DMW3 83 aa19.59■□□□□ 0.73
CLN3-240ENST00000631023 ZNF10P21506 573 aaPredicted RBP19.59■□□□□ 0.73
CLN3-240ENST00000631023 ARL1P40616 181 aaPredicted RBP19.59■□□□□ 0.73
CLN3-240ENST00000631023 XCR1P46094 333 aa19.59■□□□□ 0.73
CLN3-240ENST00000631023 CCL11P51671 97 aa19.59■□□□□ 0.73
CLN3-240ENST00000631023 CCNG1P51959 295 aa19.59■□□□□ 0.73
CLN3-240ENST00000631023 RAB8AP61006 207 aa19.59■□□□□ 0.73
CLN3-240ENST00000631023 TGM3Q08188 693 aa19.59■□□□□ 0.73
CLN3-240ENST00000631023 TMEM151BQ8IW70 566 aa19.59■□□□□ 0.73
CLN3-240ENST00000631023 ZC3H7AQ8IWR0 971 aaKnown RBP19.59■□□□□ 0.73
CLN3-240ENST00000631023 CLEC1AQ8NC01 280 aa19.59■□□□□ 0.73
CLN3-240ENST00000631023 REPS1Q96D71 796 aa19.59■□□□□ 0.73
CLN3-240ENST00000631023 SMIM10Q96HG1 83 aa19.59■□□□□ 0.73
CLN3-240ENST00000631023 REXO4Q9GZR2 422 aaKnown RBP19.59■□□□□ 0.73
CLN3-240ENST00000631023 NOL11Q9H8H0 719 aaKnown RBP19.59■□□□□ 0.73
CLN3-240ENST00000631023 MKL2Q9ULH7 1088 aa19.59■□□□□ 0.73
CLN3-240ENST00000631023 G3BP2Q9UN86 482 aaKnown RBP19.59■□□□□ 0.73
CLN3-240ENST00000631023 HS3ST3B1Q9Y662 390 aa19.59■□□□□ 0.73
CLN3-240ENST00000631023 ZNF860A6NHJ4 632 aa19.58■□□□□ 0.73
CLN3-240ENST00000631023 A8MT66 165 aa19.58■□□□□ 0.73
CLN3-240ENST00000631023 CLDN9O95484 217 aa19.58■□□□□ 0.73
CLN3-240ENST00000631023 CYC1P08574 325 aa19.58■□□□□ 0.73
CLN3-240ENST00000631023 PCNAP12004 261 aa19.58■□□□□ 0.73
CLN3-240ENST00000631023 CHAF1BQ13112 559 aa19.58■□□□□ 0.73
CLN3-240ENST00000631023 DCAF10Q5QP82 559 aa19.58■□□□□ 0.73
CLN3-240ENST00000631023 MFSD4BQ5TF39 518 aa19.58■□□□□ 0.73
CLN3-240ENST00000631023 CPZQ66K79 652 aa19.58■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms