RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 KIAA0040Q15053 153 aa10.09□□□□□ -0.79
VPS11-208ENST00000621676 RPS26P11Q5JNZ5 115 aaPredicted RBP10.09□□□□□ -0.79
VPS11-208ENST00000621676 FRMPD2BQ6IN97 320 aa10.09□□□□□ -0.79
VPS11-208ENST00000621676 LRRC70Q7Z2Q7 622 aa10.09□□□□□ -0.79
VPS11-208ENST00000621676 PLPP6Q8IY26 295 aa10.09□□□□□ -0.79
VPS11-208ENST00000621676 GTF2H4Q92759 462 aa10.09□□□□□ -0.79
VPS11-208ENST00000621676 DUSP26Q9BV47 211 aa10.09□□□□□ -0.79
VPS11-208ENST00000621676 C1QTNF7Q9BXJ2 289 aa10.09□□□□□ -0.79
VPS11-208ENST00000621676 ZNF385DQ9H6B1 395 aa10.09□□□□□ -0.79
VPS11-208ENST00000621676 COQ10BQ9H8M1 238 aa10.09□□□□□ -0.79
VPS11-208ENST00000621676 TAAR2Q9P1P5 351 aa10.09□□□□□ -0.79
VPS11-208ENST00000621676 SORCS3Q9UPU3 1222 aa10.09□□□□□ -0.79
VPS11-208ENST00000621676 CCL27Q9Y4X3 112 aa10.09□□□□□ -0.79
VPS11-208ENST00000621676 PGM3O95394 542 aa10.08□□□□□ -0.8
VPS11-208ENST00000621676 TRIM23P36406 574 aa10.08□□□□□ -0.8
VPS11-208ENST00000621676 MANFP55145 182 aaKnown RBP10.08□□□□□ -0.8
VPS11-208ENST00000621676 HBA1P69905 142 aa10.08□□□□□ -0.8
VPS11-208ENST00000621676 RCAN2Q14206 197 aa10.08□□□□□ -0.8
VPS11-208ENST00000621676 USP39Q53GS9 565 aaKnown RBP10.08□□□□□ -0.8
VPS11-208ENST00000621676 WASHC2DQ5SRD0 308 aa10.08□□□□□ -0.8
VPS11-208ENST00000621676 AVL9Q8NBF6 648 aa10.08□□□□□ -0.8
VPS11-208ENST00000621676 MAFAQ8NHW3 353 aaPredicted RBP10.08□□□□□ -0.8
VPS11-208ENST00000621676 SPPL2AQ8TCT8 520 aa10.08□□□□□ -0.8
VPS11-208ENST00000621676 NETO1Q8TDF5 533 aa10.08□□□□□ -0.8
VPS11-208ENST00000621676 NAF1Q96HR8 494 aaKnown RBP10.08□□□□□ -0.8
VPS11-208ENST00000621676 SMOXQ9NWM0 555 aa10.08□□□□□ -0.8
VPS11-208ENST00000621676 DLGAP2Q9P1A6 1054 aa10.08□□□□□ -0.8
VPS11-208ENST00000621676 ICKQ9UPZ9 632 aa10.08□□□□□ -0.8
VPS11-208ENST00000621676 MRPS2Q9Y399 296 aaKnown RBP10.08□□□□□ -0.8
VPS11-208ENST00000621676 LRRK1Q38SD2 2015 aa10.08□□□□□ -0.8
VPS11-208ENST00000621676 MDC1Q14676 2089 aaKnown RBP10.08□□□□□ -0.8
VPS11-208ENST00000621676 IGKV1-8A0A0C4DH67 115 aa10.08□□□□□ -0.8
VPS11-208ENST00000621676 TSPAN11A1L157 253 aa10.08□□□□□ -0.8
VPS11-208ENST00000621676 CLIC1O00299 241 aa10.08□□□□□ -0.8
VPS11-208ENST00000621676 HYAL3O43820 417 aaPredicted RBP10.08□□□□□ -0.8
VPS11-208ENST00000621676 CDH3P22223 829 aa10.08□□□□□ -0.8
VPS11-208ENST00000621676 POLR2IP36954 125 aaKnown RBP10.08□□□□□ -0.8
VPS11-208ENST00000621676 PRIM2P49643 509 aa10.08□□□□□ -0.8
VPS11-208ENST00000621676 HOXC5Q00444 222 aa10.08□□□□□ -0.8
VPS11-208ENST00000621676 HHEXQ03014 270 aa10.08□□□□□ -0.8
VPS11-208ENST00000621676 DPTQ07507 201 aa10.08□□□□□ -0.8
VPS11-208ENST00000621676 AGERQ15109 404 aa10.08□□□□□ -0.8
VPS11-208ENST00000621676 SAMD4BQ5PRF9 694 aaKnown RBP10.08□□□□□ -0.8
VPS11-208ENST00000621676 STK32CQ86UX6 486 aa10.08□□□□□ -0.8
VPS11-208ENST00000621676 ZFAND4Q86XD8 727 aa10.08□□□□□ -0.8
VPS11-208ENST00000621676 NAGSQ8N159 534 aa10.08□□□□□ -0.8
VPS11-208ENST00000621676 OR2A1Q8NGT9 310 aa10.08□□□□□ -0.8
VPS11-208ENST00000621676 OR2T34Q8NGX1 318 aa10.08□□□□□ -0.8
VPS11-208ENST00000621676 TEX101Q9BY14 249 aa10.08□□□□□ -0.8
VPS11-208ENST00000621676 YY1AP1Q9H869 796 aa10.08□□□□□ -0.8
VPS11-208ENST00000621676 GMEB2Q9UKD1 530 aa10.08□□□□□ -0.8
VPS11-208ENST00000621676 RAB23Q9ULC3 237 aa10.08□□□□□ -0.8
VPS11-208ENST00000621676 SIT1Q9Y3P8 196 aa10.08□□□□□ -0.8
VPS11-208ENST00000621676 PSMD11O00231 422 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 PLPP1O14494 284 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 TMPRSS11DO60235 418 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 SERPINA1P01009 418 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 BCL6P41182 706 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 GFERP55789 205 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 SMAD4Q13485 552 aaKnown RBP10.07□□□□□ -0.8
VPS11-208ENST00000621676 TLR1Q15399 786 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 PGM2L1Q6PCE3 622 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 KLHL17Q6TDP4 642 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 TMEM151BQ8IW70 566 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 VANGL1Q8TAA9 524 aaPredicted RBP10.07□□□□□ -0.8
VPS11-208ENST00000621676 COX14Q96I36 57 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 NSMCE2Q96MF7 247 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 CCDC3Q9BQI4 270 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 SLC6A16Q9GZN6 736 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 OAZ3Q9UMX2 235 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 SPTBN4Q9H254 2564 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 DHRS12A0PJE2 317 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 FAM234BA2RU67 622 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 C4orf51C9J302 202 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 FRS3O43559 492 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 WNT1P04628 370 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 MPC1LP0DKB6 136 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 CD6P30203 668 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 VHLP40337 213 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 ZFP36L2P47974 494 aaKnown RBP10.07□□□□□ -0.8
VPS11-208ENST00000621676 RAB28P51157 221 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 GAB1Q13480 694 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 GANABQ14697 944 aaKnown RBP10.07□□□□□ -0.8
VPS11-208ENST00000621676 LTB4RQ15722 352 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 ZBTB49Q6ZSB9 765 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 SPATA19Q7Z5L4 167 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 RNF130Q86XS8 419 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 PQLC1Q8N2U9 271 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 CBR4Q8N4T8 237 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 TMEM125Q96AQ2 219 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 PPCDCQ96CD2 204 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 ZNF514Q96K75 400 aaPredicted RBP10.07□□□□□ -0.8
VPS11-208ENST00000621676 GABRG3Q99928 467 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 RUBCNLQ9H714 662 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 SMURF2Q9HAU4 748 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 ATXN7L1Q9ULK2 861 aaPredicted RBP10.07□□□□□ -0.8
VPS11-208ENST00000621676 DTNAQ9Y4J8 743 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 MAN1A2O60476 641 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 GRK3P35626 688 aa10.07□□□□□ -0.8
VPS11-208ENST00000621676 PTPN5P54829 565 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms