RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 TBX6O95947 436 aaPredicted RBP14□□□□□ -0.17
CD48-203ENST00000613788 HBQ1P09105 142 aa14□□□□□ -0.17
CD48-203ENST00000613788 ITIH1P19827 911 aa14□□□□□ -0.17
CD48-203ENST00000613788 MAPK10P53779 464 aa14□□□□□ -0.17
CD48-203ENST00000613788 HMGCS1Q01581 520 aa14□□□□□ -0.17
CD48-203ENST00000613788 MUM1Q2TAK8 710 aa14□□□□□ -0.17
CD48-203ENST00000613788 SPDYAQ5MJ70 313 aa14□□□□□ -0.17
CD48-203ENST00000613788 TMEM164Q5U3C3 297 aa14□□□□□ -0.17
CD48-203ENST00000613788 FAM219BQ5XKK7 198 aa14□□□□□ -0.17
CD48-203ENST00000613788 TMEM214Q6NUQ4 689 aaKnown RBP14□□□□□ -0.17
CD48-203ENST00000613788 NIPAL1Q6NVV3 410 aa14□□□□□ -0.17
CD48-203ENST00000613788 TRIM40Q6P9F5 258 aa14□□□□□ -0.17
CD48-203ENST00000613788 FOXR1Q6PIV2 292 aa14□□□□□ -0.17
CD48-203ENST00000613788 TMEM126BQ8IUX1 230 aa14□□□□□ -0.17
CD48-203ENST00000613788 MS4A6EQ96DS6 147 aa14□□□□□ -0.17
CD48-203ENST00000613788 TEFMQ96QE5 360 aaKnown RBP14□□□□□ -0.17
CD48-203ENST00000613788 NSRP1Q9H0G5 558 aaKnown RBP14□□□□□ -0.17
CD48-203ENST00000613788 KLHL31Q9H511 634 aa14□□□□□ -0.17
CD48-203ENST00000613788 MEAF6Q9HAF1 191 aa14□□□□□ -0.17
CD48-203ENST00000613788 APMAPQ9HDC9 416 aa14□□□□□ -0.17
CD48-203ENST00000613788 PISDQ9UG56 409 aa14□□□□□ -0.17
CD48-203ENST00000613788 SRPK3Q9UPE1 567 aa14□□□□□ -0.17
CD48-203ENST00000613788 SATB2Q9UPW6 733 aa14□□□□□ -0.17
CD48-203ENST00000613788 PCDHB3Q9Y5E6 796 aa14□□□□□ -0.17
CD48-203ENST00000613788 CFAP54Q96N23 3096 aa13.99□□□□□ -0.17
CD48-203ENST00000613788 CEP250Q9BV73 2442 aa13.99□□□□□ -0.17
CD48-203ENST00000613788 A0A088AWK7 358 aa13.99□□□□□ -0.17
CD48-203ENST00000613788 ZNF749O43361 778 aa13.99□□□□□ -0.17
CD48-203ENST00000613788 ERI3O43414 337 aaKnown RBP13.99□□□□□ -0.17
CD48-203ENST00000613788 SH3BGRLO75368 114 aa13.99□□□□□ -0.17
CD48-203ENST00000613788 SCRG1O75711 98 aa13.99□□□□□ -0.17
CD48-203ENST00000613788 ETHE1O95571 254 aa13.99□□□□□ -0.17
CD48-203ENST00000613788 ALOX15P16050 662 aaPredicted RBP13.99□□□□□ -0.17
CD48-203ENST00000613788 ZNF10P21506 573 aaPredicted RBP13.99□□□□□ -0.17
CD48-203ENST00000613788 HNRNPH1P31943 449 aaKnown RBP13.99□□□□□ -0.17
CD48-203ENST00000613788 TSFMP43897 325 aaKnown RBP13.99□□□□□ -0.17
CD48-203ENST00000613788 ID4P47928 161 aa13.99□□□□□ -0.17
CD48-203ENST00000613788 SEC24CP53992 1094 aa13.99□□□□□ -0.17
CD48-203ENST00000613788 SKP1P63208 163 aa13.99□□□□□ -0.17
CD48-203ENST00000613788 FAM53BQ14153 422 aa13.99□□□□□ -0.17
CD48-203ENST00000613788 HERC3Q15034 1050 aa13.99□□□□□ -0.17
CD48-203ENST00000613788 NR6A1Q15406 480 aa13.99□□□□□ -0.17
CD48-203ENST00000613788 XKR7Q5GH72 579 aa13.99□□□□□ -0.17
CD48-203ENST00000613788 C3orf38Q5JPI3 329 aa13.99□□□□□ -0.17
CD48-203ENST00000613788 Q6ZSR9 355 aa13.99□□□□□ -0.17
CD48-203ENST00000613788 CPLX4Q7Z7G2 160 aa13.99□□□□□ -0.17
CD48-203ENST00000613788 UTP15Q8TED0 518 aaKnown RBP13.99□□□□□ -0.17
CD48-203ENST00000613788 GAL3ST3Q96A11 431 aa13.99□□□□□ -0.17
CD48-203ENST00000613788 TUBGCP3Q96CW5 907 aa13.99□□□□□ -0.17
CD48-203ENST00000613788 METTL2AQ96IZ6 378 aaKnown RBP13.99□□□□□ -0.17
CD48-203ENST00000613788 PPP3R2Q96LZ3 170 aa13.99□□□□□ -0.17
CD48-203ENST00000613788 KCNC2Q96PR1 638 aa13.99□□□□□ -0.17
CD48-203ENST00000613788 CTRCQ99895 268 aa13.99□□□□□ -0.17
CD48-203ENST00000613788 TBCDQ9BTW9 1192 aa13.99□□□□□ -0.17
CD48-203ENST00000613788 DDA1Q9BW61 102 aa13.99□□□□□ -0.17
CD48-203ENST00000613788 ROGDIQ9GZN7 287 aa13.99□□□□□ -0.17
CD48-203ENST00000613788 NPHS2Q9NP85 383 aa13.99□□□□□ -0.17
CD48-203ENST00000613788 CUTCQ9NTM9 273 aa13.99□□□□□ -0.17
CD48-203ENST00000613788 PCDHGA8Q9Y5G5 932 aa13.99□□□□□ -0.17
CD48-203ENST00000613788 PTGDR2Q9Y5Y4 395 aa13.99□□□□□ -0.17
CD48-203ENST00000613788 ATP6AP2A0A1C7CYW4 349 aa13.98□□□□□ -0.17
CD48-203ENST00000613788 SRRM3A6NNA2 597 aaPredicted RBP13.98□□□□□ -0.17
CD48-203ENST00000613788 NPIPB8E9PQR5 432 aa13.98□□□□□ -0.17
CD48-203ENST00000613788 SAP18O00422 153 aaKnown RBP13.98□□□□□ -0.17
CD48-203ENST00000613788 ZNF195O14628 629 aa13.98□□□□□ -0.17
CD48-203ENST00000613788 HYAL3O43820 417 aaPredicted RBP13.98□□□□□ -0.17
CD48-203ENST00000613788 SEC22BO75396 215 aa13.98□□□□□ -0.17
CD48-203ENST00000613788 ATP6AP2O75787 350 aa13.98□□□□□ -0.17
CD48-203ENST00000613788 JUNP05412 331 aaKnown RBP13.98□□□□□ -0.17
CD48-203ENST00000613788 ZNF888P0CJ79 500 aaPredicted RBP13.98□□□□□ -0.17
CD48-203ENST00000613788 SMIM10L1P0DMW3 83 aa13.98□□□□□ -0.17
CD48-203ENST00000613788 ALOX12P18054 663 aa13.98□□□□□ -0.17
CD48-203ENST00000613788 PRPH2P23942 346 aa13.98□□□□□ -0.17
CD48-203ENST00000613788 PLA2G16P53816 162 aa13.98□□□□□ -0.17
CD48-203ENST00000613788 AQP5P55064 265 aa13.98□□□□□ -0.17
CD48-203ENST00000613788 AP5B1Q2VPB7 878 aa13.98□□□□□ -0.17
CD48-203ENST00000613788 ATP6AP1LQ52LC2 224 aa13.98□□□□□ -0.17
CD48-203ENST00000613788 SPIN4Q56A73 249 aa13.98□□□□□ -0.17
CD48-203ENST00000613788 PWWP2BQ6NUJ5 590 aa13.98□□□□□ -0.17
CD48-203ENST00000613788 ABHD17CQ6PCB6 329 aa13.98□□□□□ -0.17
CD48-203ENST00000613788 EPGNQ6UW88 154 aa13.98□□□□□ -0.17
CD48-203ENST00000613788 PAGE2Q7Z2X7 111 aa13.98□□□□□ -0.17
CD48-203ENST00000613788 ZCCHC10Q8TBK6 192 aa13.98□□□□□ -0.17
CD48-203ENST00000613788 MVB12AQ96EY5 273 aa13.98□□□□□ -0.17
CD48-203ENST00000613788 SMIM10Q96HG1 83 aa13.98□□□□□ -0.17
CD48-203ENST00000613788 PPP1R36Q96LQ0 422 aa13.98□□□□□ -0.17
CD48-203ENST00000613788 C3orf30Q96M34 536 aa13.98□□□□□ -0.17
CD48-203ENST00000613788 QRFPRQ96P65 431 aa13.98□□□□□ -0.17
CD48-203ENST00000613788 B3GNT4Q9C0J1 378 aa13.98□□□□□ -0.17
CD48-203ENST00000613788 ACTR5Q9H9F9 607 aaPredicted RBP13.98□□□□□ -0.17
CD48-203ENST00000613788 POLR1BQ9H9Y6 1135 aa13.98□□□□□ -0.17
CD48-203ENST00000613788 LRTM1Q9HBL6 345 aa13.98□□□□□ -0.17
CD48-203ENST00000613788 ANKHQ9HCJ1 492 aa13.98□□□□□ -0.17
CD48-203ENST00000613788 TXLNGQ9NUQ3 528 aa13.98□□□□□ -0.17
CD48-203ENST00000613788 C1orf109Q9NX04 203 aa13.98□□□□□ -0.17
CD48-203ENST00000613788 CDC14AQ9UNH5 594 aa13.98□□□□□ -0.17
CD48-203ENST00000613788 CCL27Q9Y4X3 112 aa13.98□□□□□ -0.17
CD48-203ENST00000613788 PCDHGA3Q9Y5H0 932 aa13.98□□□□□ -0.17
CD48-203ENST00000613788 DIAPH2O60879 1101 aa13.97□□□□□ -0.17
CD48-203ENST00000613788 SHOX2O60902 331 aaPredicted RBP13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms