RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 CELF5Q8N6W0 485 aaKnown RBP13.52□□□□□ -0.25
COL6A1-207ENST00000612273 MRPS31Q92665 395 aaKnown RBP13.52□□□□□ -0.25
COL6A1-207ENST00000612273 PLAGL1Q9UM63 463 aa13.52□□□□□ -0.25
COL6A1-207ENST00000612273 SH2B3Q9UQQ2 575 aa13.52□□□□□ -0.25
COL6A1-207ENST00000612273 RTCAO00442 366 aaKnown RBP13.51□□□□□ -0.25
COL6A1-207ENST00000612273 GCM2O75603 506 aaPredicted RBP13.51□□□□□ -0.25
COL6A1-207ENST00000612273 RFPL2O75678 378 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 URODP06132 367 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 PABPC1P11940 636 aaKnown RBP13.51□□□□□ -0.25
COL6A1-207ENST00000612273 EIF2DP41214 584 aaKnown RBP13.51□□□□□ -0.25
COL6A1-207ENST00000612273 ITGA1P56199 1179 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 ELP6Q0PNE2 266 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 MTA1Q13330 715 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 ASTLQ6HA08 431 aaPredicted RBP13.51□□□□□ -0.25
COL6A1-207ENST00000612273 TSEN54Q7Z6J9 526 aaKnown RBP13.51□□□□□ -0.25
COL6A1-207ENST00000612273 TCAIMQ8N3R3 496 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 UBTD2Q8WUN7 234 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 ASZ1Q8WWH4 475 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 RAB8BQ92930 207 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 CEP19Q96LK0 163 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 ZNF556Q9HAH1 456 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 INSL5Q9Y5Q6 135 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 KCNK2O95069 426 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 C8GP07360 202 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 RECQLP46063 649 aaPredicted RBP13.51□□□□□ -0.25
COL6A1-207ENST00000612273 SLC6A12P48065 614 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 C2orf80Q0P641 193 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 ZNF362Q5T0B9 420 aaPredicted RBP13.51□□□□□ -0.25
COL6A1-207ENST00000612273 ATAD3BQ5T9A4 648 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 CYP4Z2PQ8N1L4 340 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 WDR36Q8NI36 951 aaKnown RBP13.51□□□□□ -0.25
COL6A1-207ENST00000612273 WDR48Q8TAF3 677 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 TMEM203Q969S6 136 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 DMRTB1Q96MA1 342 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 IL17FQ96PD4 163 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 VPS35Q96QK1 796 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 DOHHQ9BU89 302 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 NUAK2Q9H093 628 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 LINC00597Q9H2U6 94 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 HCFC1R1Q9NWW0 138 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 RUVBL1Q9Y265 456 aaKnown RBP13.51□□□□□ -0.25
COL6A1-207ENST00000612273 FAM32AQ9Y421 112 aaKnown RBP13.51□□□□□ -0.25
COL6A1-207ENST00000612273 CFAP20Q9Y6A4 193 aaKnown RBP13.51□□□□□ -0.25
COL6A1-207ENST00000612273 CKAP5Q14008 2032 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 PRAMEF25A6NGN4 478 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 PLK4O00444 970 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 SCAMP2O15127 329 aaKnown RBP13.51□□□□□ -0.25
COL6A1-207ENST00000612273 KLK1P06870 262 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 SP3Q02447 781 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 KCNC4Q03721 635 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 ARSIQ5FYB1 569 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 LYPLAL1Q5VWZ2 237 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 C11orf96Q7Z7L8 435 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 PARP16Q8N5Y8 322 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 C2orf15Q8WU43 125 aaKnown RBP13.51□□□□□ -0.25
COL6A1-207ENST00000612273 ATL1Q8WXF7 558 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 CLP1Q92989 425 aaKnown RBP13.51□□□□□ -0.25
COL6A1-207ENST00000612273 CEP295NLQ96MC4 621 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 CNPPD1Q9BV87 410 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 YIPF2Q9BWQ6 316 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 CCNB1IP1Q9NPC3 277 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 GPATCH2Q9NW75 528 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 EHD3Q9NZN3 535 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 DNAJC27Q9NZQ0 273 aa13.51□□□□□ -0.25
COL6A1-207ENST00000612273 H3BN98 237 aa13.5□□□□□ -0.25
COL6A1-207ENST00000612273 DSCR3O14972 297 aa13.5□□□□□ -0.25
COL6A1-207ENST00000612273 GREM1O60565 184 aa13.5□□□□□ -0.25
COL6A1-207ENST00000612273 ADRA2AP08913 450 aa13.5□□□□□ -0.25
COL6A1-207ENST00000612273 ADORA3P0DMS8 318 aa13.5□□□□□ -0.25
COL6A1-207ENST00000612273 TCEA1P23193 301 aaKnown RBP13.5□□□□□ -0.25
COL6A1-207ENST00000612273 SOX3P41225 446 aa13.5□□□□□ -0.25
COL6A1-207ENST00000612273 RAB15P59190 212 aa13.5□□□□□ -0.25
COL6A1-207ENST00000612273 NKX3-2P78367 333 aa13.5□□□□□ -0.25
COL6A1-207ENST00000612273 SREBF2Q12772 1141 aa13.5□□□□□ -0.25
COL6A1-207ENST00000612273 SCARB2Q14108 478 aa13.5□□□□□ -0.25
COL6A1-207ENST00000612273 SLC5A12Q1EHB4 618 aa13.5□□□□□ -0.25
COL6A1-207ENST00000612273 AMER2Q8N7J2 671 aa13.5□□□□□ -0.25
COL6A1-207ENST00000612273 L3MBTL4Q8NA19 623 aa13.5□□□□□ -0.25
COL6A1-207ENST00000612273 AQP11Q8NBQ7 271 aa13.5□□□□□ -0.25
COL6A1-207ENST00000612273 B3GNT7Q8NFL0 401 aa13.5□□□□□ -0.25
COL6A1-207ENST00000612273 ZNF566Q969W8 418 aa13.5□□□□□ -0.25
COL6A1-207ENST00000612273 FAM129BQ96TA1 746 aa13.5□□□□□ -0.25
COL6A1-207ENST00000612273 DDX28Q9NUL7 540 aaKnown RBP13.5□□□□□ -0.25
COL6A1-207ENST00000612273 STOX2Q9P2F5 926 aaPredicted RBP13.5□□□□□ -0.25
COL6A1-207ENST00000612273 AP3M1Q9Y2T2 418 aa13.5□□□□□ -0.25
COL6A1-207ENST00000612273 PCDHGB1Q9Y5G3 927 aa13.5□□□□□ -0.25
COL6A1-207ENST00000612273 GBF1Q92538 1859 aa13.5□□□□□ -0.25
COL6A1-207ENST00000612273 PRAMEF33A0A0G2JMD5 474 aa13.5□□□□□ -0.25
COL6A1-207ENST00000612273 PRAMEF10O60809 474 aa13.5□□□□□ -0.25
COL6A1-207ENST00000612273 UPK1BO75841 260 aa13.5□□□□□ -0.25
COL6A1-207ENST00000612273 HOXB9P17482 250 aaPredicted RBP13.5□□□□□ -0.25
COL6A1-207ENST00000612273 TAS2R50P59544 299 aa13.5□□□□□ -0.25
COL6A1-207ENST00000612273 DEPDC1Q5TB30 811 aa13.5□□□□□ -0.25
COL6A1-207ENST00000612273 RSBN1Q5VWQ0 802 aaPredicted RBP13.5□□□□□ -0.25
COL6A1-207ENST00000612273 TMEM220Q6QAJ8 160 aa13.5□□□□□ -0.25
COL6A1-207ENST00000612273 CCBE1Q6UXH8 406 aaPredicted RBP13.5□□□□□ -0.25
COL6A1-207ENST00000612273 TRAPPC5Q8IUR0 188 aa13.5□□□□□ -0.25
COL6A1-207ENST00000612273 CFAP206Q8IYR0 622 aa13.5□□□□□ -0.25
COL6A1-207ENST00000612273 DNAJC22Q8N4W6 341 aa13.5□□□□□ -0.25
COL6A1-207ENST00000612273 PHF10Q8WUB8 498 aaKnown RBP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms