RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 TSPAN8P19075 237 aa15.7■□□□□ 0.1
CCDC28A-202ENST00000611852 FBLP22087 321 aaKnown RBP15.7■□□□□ 0.1
CCDC28A-202ENST00000611852 AVPR1BP47901 424 aa15.7■□□□□ 0.1
CCDC28A-202ENST00000611852 CLCQ05315 142 aa15.7■□□□□ 0.1
CCDC28A-202ENST00000611852 HERC3Q15034 1050 aa15.7■□□□□ 0.1
CCDC28A-202ENST00000611852 CRTC2Q53ET0 693 aaPredicted RBP15.7■□□□□ 0.1
CCDC28A-202ENST00000611852 FAM69BQ5VUD6 431 aa15.7■□□□□ 0.1
CCDC28A-202ENST00000611852 EXOC3L1Q86VI1 746 aa15.7■□□□□ 0.1
CCDC28A-202ENST00000611852 PDSS2Q86YH6 399 aa15.7■□□□□ 0.1
CCDC28A-202ENST00000611852 ARMC2Q8NEN0 867 aa15.7■□□□□ 0.1
CCDC28A-202ENST00000611852 TCP10LQ8TDR4 215 aa15.7■□□□□ 0.1
CCDC28A-202ENST00000611852 UTP15Q8TED0 518 aaKnown RBP15.7■□□□□ 0.1
CCDC28A-202ENST00000611852 PPP4R1Q8TF05 950 aa15.7■□□□□ 0.1
CCDC28A-202ENST00000611852 ZNF473Q8WTR7 871 aaKnown RBP15.7■□□□□ 0.1
CCDC28A-202ENST00000611852 CCT6BQ92526 530 aa15.7■□□□□ 0.1
CCDC28A-202ENST00000611852 FAM111AQ96PZ2 611 aa15.7■□□□□ 0.1
CCDC28A-202ENST00000611852 ANKHQ9HCJ1 492 aa15.7■□□□□ 0.1
CCDC28A-202ENST00000611852 OXSMQ9NWU1 459 aa15.7■□□□□ 0.1
CCDC28A-202ENST00000611852 SLC17A7Q9P2U7 560 aa15.7■□□□□ 0.1
CCDC28A-202ENST00000611852 PADI2Q9Y2J8 665 aa15.7■□□□□ 0.1
CCDC28A-202ENST00000611852 A0A1B0GTL3 188 aa15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 LRIT2A6NDA9 550 aa15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 URADA6NGE7 173 aa15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 H0YIG0 161 aa15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 PRPF4O43172 522 aaKnown RBP eCLIP15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 RECKO95980 971 aa15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 OTCP00480 354 aa15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 CD63P08962 238 aa15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 ZNF888P0CJ79 500 aaPredicted RBP15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 SMIM10L1P0DMW3 83 aa15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 PCNAP12004 261 aa15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 ALOX12P18054 663 aa15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 HNRNPH1P31943 449 aaKnown RBP15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 ARL1P40616 181 aaPredicted RBP15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 FOXL2P58012 376 aa15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 DNAJB13P59910 316 aa15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 STXBP1P61764 594 aaKnown RBP15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 MC1RQ01726 317 aa15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 PCLAFQ15004 111 aa15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 RBBP7Q16576 425 aa15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 NKG7Q16617 165 aa15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 CPSF6Q16630 551 aaKnown RBP eCLIP15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 ADPRMQ3LIE5 342 aa15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 TOR1AIP1Q5JTV8 583 aa15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 ABHD13Q7L211 337 aa15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 SYVN1Q86TM6 617 aa15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 OR4F6Q8NGB9 312 aa15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 TRPC4APQ8TEL6 797 aa15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 SMIM10Q96HG1 83 aa15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 WDR54Q9H977 334 aa15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 ZNF282Q9UDV7 671 aaPredicted RBP15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 MID2Q9UJV3 735 aa15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 NAALAD2Q9Y3Q0 740 aa15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 TSC22D4Q9Y3Q8 395 aa15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 MAP4K5Q9Y4K4 846 aa15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 PCDHGA11Q9Y5H2 935 aa15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 LOC400499M0QZD8 3231 aa15.69■□□□□ 0.1
CCDC28A-202ENST00000611852 IGLV3-12A0A075B6K2 115 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 VSTM2BA6NLU5 285 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 C4orf51C9J302 202 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 SGK494L7N484 410 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 GALR3O60755 368 aaPredicted RBP15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 KLHL18O94889 574 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 B3GALT4O96024 378 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 MYZAPP0CAP1 466 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 SERPINB1P30740 379 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 RAB8AP61006 207 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 IL10RAQ13651 578 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 ERV3-1Q14264 604 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 ZRSR2Q15696 482 aaKnown RBP15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 SYT16Q17RD7 645 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 GGTA1PQ4G0N0 100 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 DEFB134Q4QY38 66 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 MILR1Q7Z6M3 343 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 TMEM151BQ8IW70 566 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 CCNYL1Q8N7R7 359 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 OR2Y1Q8NGV0 311 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 HUS1BQ8NHY5 278 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 REPS1Q96D71 796 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 MS4A6EQ96DS6 147 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 SPSB2Q99619 263 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 GSTO2Q9H4Y5 243 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 SSU72Q9NP77 194 aaKnown RBP15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 TRPC4Q9UBN4 977 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 ADGRE2Q9UHX3 823 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 ZNF225Q9UK10 706 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 PTRH2Q9Y3E5 179 aaKnown RBP15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 ACTL7BQ9Y614 415 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 MGAQ8IWI9 3026 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 FFAR3O14843 346 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 GPR42O15529 346 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 RDH16O75452 317 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 MLYCDO95822 493 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 FURINP09958 794 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 PRKAR1AP10644 381 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 HPDP32754 393 aaPredicted RBP15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 PIK3CBP42338 1070 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 NAGLUP54802 743 aa15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 MAT1AQ00266 395 aaKnown RBP15.68■□□□□ 0.1
CCDC28A-202ENST00000611852 OCA2Q04671 838 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms