RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 MAU2Q9Y6X3 613 aa17.66■□□□□ 0.42
UPF1-210ENST00000600689 CASP8AP2Q9UKL3 1982 aa17.66■□□□□ 0.42
UPF1-210ENST00000600689 MTMR11A4FU01 709 aa17.66■□□□□ 0.42
UPF1-210ENST00000600689 CLEC2LP0C7M8 214 aa17.66■□□□□ 0.42
UPF1-210ENST00000600689 SLC11A1P49279 550 aa17.66■□□□□ 0.42
UPF1-210ENST00000600689 DGKKQ5KSL6 1271 aa17.66■□□□□ 0.42
UPF1-210ENST00000600689 PAQR6Q6TCH4 344 aa17.66■□□□□ 0.42
UPF1-210ENST00000600689 RAET1EQ8TD07 263 aa17.66■□□□□ 0.42
UPF1-210ENST00000600689 PIK3R3Q92569 461 aa17.66■□□□□ 0.42
UPF1-210ENST00000600689 FOXJ1Q92949 421 aa17.66■□□□□ 0.42
UPF1-210ENST00000600689 WBP2Q969T9 261 aa17.66■□□□□ 0.42
UPF1-210ENST00000600689 TRMT61AQ96FX7 289 aaKnown RBP17.66■□□□□ 0.42
UPF1-210ENST00000600689 IL26Q9NPH9 171 aa17.66■□□□□ 0.42
UPF1-210ENST00000600689 TMEM39AQ9NV64 488 aa17.66■□□□□ 0.42
UPF1-210ENST00000600689 TRPS1Q9UHF7 1281 aa17.66■□□□□ 0.42
UPF1-210ENST00000600689 MAN2B2Q9Y2E5 1009 aa17.66■□□□□ 0.42
UPF1-210ENST00000600689 ZSCAN5BA6NJL1 495 aa17.66■□□□□ 0.42
UPF1-210ENST00000600689 PRAMEF4O60810 478 aa17.66■□□□□ 0.42
UPF1-210ENST00000600689 ARF5P84085 180 aa17.66■□□□□ 0.42
UPF1-210ENST00000600689 CHIT1Q13231 466 aa17.66■□□□□ 0.42
UPF1-210ENST00000600689 GPR50Q13585 617 aa17.66■□□□□ 0.42
UPF1-210ENST00000600689 CCDC85BQ15834 202 aaPredicted RBP17.66■□□□□ 0.42
UPF1-210ENST00000600689 COX20Q5RI15 118 aa17.66■□□□□ 0.42
UPF1-210ENST00000600689 PRAMEF9Q5VWM5 478 aa17.66■□□□□ 0.42
UPF1-210ENST00000600689 LHX8Q68G74 356 aa17.66■□□□□ 0.42
UPF1-210ENST00000600689 ANKS3Q6ZW76 656 aa17.66■□□□□ 0.42
UPF1-210ENST00000600689 SERPINA11Q86U17 422 aa17.66■□□□□ 0.42
UPF1-210ENST00000600689 TSPAN33Q86UF1 283 aa17.66■□□□□ 0.42
UPF1-210ENST00000600689 RBFAQ8N0V3 343 aa17.66■□□□□ 0.42
UPF1-210ENST00000600689 LMNTD1Q8N9Z9 388 aa17.66■□□□□ 0.42
UPF1-210ENST00000600689 FATE1Q969F0 183 aa17.66■□□□□ 0.42
UPF1-210ENST00000600689 MCCC1Q96RQ3 725 aaPredicted RBP17.66■□□□□ 0.42
UPF1-210ENST00000600689 ZNF556Q9HAH1 456 aa17.66■□□□□ 0.42
UPF1-210ENST00000600689 DYRK4Q9NR20 520 aa17.66■□□□□ 0.42
UPF1-210ENST00000600689 NDUFAF4Q9P032 175 aa17.66■□□□□ 0.42
UPF1-210ENST00000600689 PLXNA3P51805 1871 aa17.65■□□□□ 0.42
UPF1-210ENST00000600689 KDELR3O43731 214 aa17.65■□□□□ 0.42
UPF1-210ENST00000600689 TRBC1P01850 177 aa17.65■□□□□ 0.42
UPF1-210ENST00000600689 IL7P13232 177 aa17.65■□□□□ 0.42
UPF1-210ENST00000600689 RPL17P18621 184 aaKnown RBP17.65■□□□□ 0.42
UPF1-210ENST00000600689 MAGEA11P43364 429 aa17.65■□□□□ 0.42
UPF1-210ENST00000600689 SSX1Q16384 188 aa17.65■□□□□ 0.42
UPF1-210ENST00000600689 ST13P5Q8NFI4 369 aaPredicted RBP17.65■□□□□ 0.42
UPF1-210ENST00000600689 ZFYVE1Q9HBF4 777 aa17.65■□□□□ 0.42
UPF1-210ENST00000600689 OLA1Q9NTK5 396 aaKnown RBP17.65■□□□□ 0.42
UPF1-210ENST00000600689 TMEM161AQ9NX61 479 aa17.65■□□□□ 0.42
UPF1-210ENST00000600689 CCDC59Q9P031 241 aaKnown RBP17.65■□□□□ 0.42
UPF1-210ENST00000600689 TRAV19A0A0A6YYK7 116 aa17.65■□□□□ 0.42
UPF1-210ENST00000600689 ERVH48-1M5A8F1 160 aa17.65■□□□□ 0.42
UPF1-210ENST00000600689 KPNA5O15131 536 aa17.65■□□□□ 0.42
UPF1-210ENST00000600689 TMCC2O75069 709 aa17.65■□□□□ 0.42
UPF1-210ENST00000600689 ITGALP20701 1170 aa17.65■□□□□ 0.42
UPF1-210ENST00000600689 LRRC74AQ0VAA2 488 aa17.65■□□□□ 0.42
UPF1-210ENST00000600689 NFATC2Q13469 925 aa17.65■□□□□ 0.42
UPF1-210ENST00000600689 GAB1Q13480 694 aa17.65■□□□□ 0.42
UPF1-210ENST00000600689 MRPL58Q14197 206 aaKnown RBP17.65■□□□□ 0.42
UPF1-210ENST00000600689 TSEN54Q7Z6J9 526 aaKnown RBP17.65■□□□□ 0.42
UPF1-210ENST00000600689 CASD1Q96PB1 797 aa17.65■□□□□ 0.42
UPF1-210ENST00000600689 NTMT1Q9BV86 223 aa17.65■□□□□ 0.42
UPF1-210ENST00000600689 TOR4AQ9NXH8 423 aa17.65■□□□□ 0.42
UPF1-210ENST00000600689 CFL2Q9Y281 166 aa17.65■□□□□ 0.42
UPF1-210ENST00000600689 AP3M1Q9Y2T2 418 aa17.65■□□□□ 0.42
UPF1-210ENST00000600689 PCDHB1Q9Y5F3 818 aa17.65■□□□□ 0.42
UPF1-210ENST00000600689 RFXAPO00287 272 aa17.64■□□□□ 0.41
UPF1-210ENST00000600689 CAPN5O15484 640 aaPredicted RBP17.64■□□□□ 0.41
UPF1-210ENST00000600689 ADAM12O43184 909 aa17.64■□□□□ 0.41
UPF1-210ENST00000600689 ALDH1A1P00352 501 aa17.64■□□□□ 0.41
UPF1-210ENST00000600689 KLKB1P03952 638 aa17.64■□□□□ 0.41
UPF1-210ENST00000600689 PRPS2P11908 318 aa17.64■□□□□ 0.41
UPF1-210ENST00000600689 CAV3P56539 151 aa17.64■□□□□ 0.41
UPF1-210ENST00000600689 SMU1Q2TAY7 513 aa17.64■□□□□ 0.41
UPF1-210ENST00000600689 BCL7CQ8WUZ0 217 aaPredicted RBP17.64■□□□□ 0.41
UPF1-210ENST00000600689 JPH3Q8WXH2 748 aaPredicted RBP17.64■□□□□ 0.41
UPF1-210ENST00000600689 GFM1Q96RP9 751 aaKnown RBP17.64■□□□□ 0.41
UPF1-210ENST00000600689 SLC32A1Q9H598 525 aa17.64■□□□□ 0.41
UPF1-210ENST00000600689 COQ3Q9NZJ6 369 aa17.64■□□□□ 0.41
UPF1-210ENST00000600689 PCDHB7Q9Y5E2 793 aa17.64■□□□□ 0.41
UPF1-210ENST00000600689 SAP18O00422 153 aaKnown RBP17.64■□□□□ 0.41
UPF1-210ENST00000600689 SYN3O14994 580 aa17.64■□□□□ 0.41
UPF1-210ENST00000600689 SCO2O43819 266 aa17.64■□□□□ 0.41
UPF1-210ENST00000600689 AP2A2O94973 939 aa17.64■□□□□ 0.41
UPF1-210ENST00000600689 AMD1P17707 334 aa17.64■□□□□ 0.41
UPF1-210ENST00000600689 CYP2A7P20853 494 aa17.64■□□□□ 0.41
UPF1-210ENST00000600689 CNR2P34972 360 aa17.64■□□□□ 0.41
UPF1-210ENST00000600689 CYP4F8P98187 520 aa17.64■□□□□ 0.41
UPF1-210ENST00000600689 PTGES3Q15185 160 aaKnown RBP17.64■□□□□ 0.41
UPF1-210ENST00000600689 LIPKQ5VXJ0 399 aa17.64■□□□□ 0.41
UPF1-210ENST00000600689 ASB15Q8WXK1 588 aa17.64■□□□□ 0.41
UPF1-210ENST00000600689 SNX18Q96RF0 628 aa17.64■□□□□ 0.41
UPF1-210ENST00000600689 FAM129BQ96TA1 746 aa17.64■□□□□ 0.41
UPF1-210ENST00000600689 MAP4K5Q9Y4K4 846 aa17.64■□□□□ 0.41
UPF1-210ENST00000600689 PIKFYVEQ9Y2I7 2098 aa17.64■□□□□ 0.41
UPF1-210ENST00000600689 GNG14A0A1W2PPG7 69 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 CCDC182A6NF36 153 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 TBKBP1A7MCY6 615 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 F11P03951 625 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 CCNYL3P0C7X3 344 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 WNT3P56703 355 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 RUNX1T1Q06455 604 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 NFE2L1Q14494 772 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms