RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 OLFM1Q99784 485 aa16.53■□□□□ 0.24
SHKBP1-223ENST00000600552 RUBCNLQ9H714 662 aa16.53■□□□□ 0.24
SHKBP1-223ENST00000600552 MMP25Q9NPA2 562 aa16.53■□□□□ 0.24
SHKBP1-223ENST00000600552 TINAGQ9UJW2 476 aa16.53■□□□□ 0.24
SHKBP1-223ENST00000600552 IKZF3Q9UKT9 509 aa16.53■□□□□ 0.24
SHKBP1-223ENST00000600552 MAGEB17A8MXT2 336 aa16.52■□□□□ 0.24
SHKBP1-223ENST00000600552 GALR3O60755 368 aaPredicted RBP16.52■□□□□ 0.24
SHKBP1-223ENST00000600552 SLC19A2O60779 497 aa16.52■□□□□ 0.24
SHKBP1-223ENST00000600552 TSPAN12O95859 305 aa16.52■□□□□ 0.24
SHKBP1-223ENST00000600552 CYC1P08574 325 aa16.52■□□□□ 0.24
SHKBP1-223ENST00000600552 HTR1EP28566 365 aa16.52■□□□□ 0.24
SHKBP1-223ENST00000600552 CA7P43166 264 aa16.52■□□□□ 0.24
SHKBP1-223ENST00000600552 BTG2P78543 158 aa16.52■□□□□ 0.24
SHKBP1-223ENST00000600552 ART3Q13508 389 aa16.52■□□□□ 0.24
SHKBP1-223ENST00000600552 H3F3CQ6NXT2 135 aa16.52■□□□□ 0.24
SHKBP1-223ENST00000600552 TRMT10BQ6PF06 316 aaKnown RBP16.52■□□□□ 0.24
SHKBP1-223ENST00000600552 KIAA0408Q6ZU52 694 aa16.52■□□□□ 0.24
SHKBP1-223ENST00000600552 GALNTL5Q7Z4T8 443 aa16.52■□□□□ 0.24
SHKBP1-223ENST00000600552 PNPLA5Q7Z6Z6 429 aaPredicted RBP16.52■□□□□ 0.24
SHKBP1-223ENST00000600552 MDS2Q8NDY4 140 aa16.52■□□□□ 0.24
SHKBP1-223ENST00000600552 ABHD11Q8NFV4 315 aa16.52■□□□□ 0.24
SHKBP1-223ENST00000600552 OR56A3Q8NH54 315 aa16.52■□□□□ 0.24
SHKBP1-223ENST00000600552 ATL1Q8WXF7 558 aa16.52■□□□□ 0.24
SHKBP1-223ENST00000600552 NEIL2Q969S2 332 aa16.52■□□□□ 0.24
SHKBP1-223ENST00000600552 FBXL8Q96CD0 374 aa16.52■□□□□ 0.24
SHKBP1-223ENST00000600552 OR1F2PQ96R84 312 aa16.52■□□□□ 0.24
SHKBP1-223ENST00000600552 EGFL8Q99944 293 aa16.52■□□□□ 0.24
SHKBP1-223ENST00000600552 NAT9Q9BTE0 207 aa16.52■□□□□ 0.24
SHKBP1-223ENST00000600552 FAM129AQ9BZQ8 928 aa16.52■□□□□ 0.24
SHKBP1-223ENST00000600552 SNX12Q9UMY4 172 aa16.52■□□□□ 0.24
SHKBP1-223ENST00000600552 LRBAP50851 2863 aa16.52■□□□□ 0.24
SHKBP1-223ENST00000600552 NPEPPSL1A6NEC2 478 aa16.51■□□□□ 0.23
SHKBP1-223ENST00000600552 PSMD12O00232 456 aaPredicted RBP16.51■□□□□ 0.23
SHKBP1-223ENST00000600552 CDC7O00311 574 aa16.51■□□□□ 0.23
SHKBP1-223ENST00000600552 PRMT3O60678 531 aa16.51■□□□□ 0.23
SHKBP1-223ENST00000600552 IL10P22301 178 aa16.51■□□□□ 0.23
SHKBP1-223ENST00000600552 JAK1P23458 1154 aa16.51■□□□□ 0.23
SHKBP1-223ENST00000600552 AP1S2P56377 157 aa16.51■□□□□ 0.23
SHKBP1-223ENST00000600552 SKP1P63208 163 aa16.51■□□□□ 0.23
SHKBP1-223ENST00000600552 HYAL2Q12891 473 aa16.51■□□□□ 0.23
SHKBP1-223ENST00000600552 PWP1Q13610 501 aa16.51■□□□□ 0.23
SHKBP1-223ENST00000600552 TOR1AIP1Q5JTV8 583 aa16.51■□□□□ 0.23
SHKBP1-223ENST00000600552 FAM45BPQ6NSW5 357 aa16.51■□□□□ 0.23
SHKBP1-223ENST00000600552 ABHD13Q7L211 337 aa16.51■□□□□ 0.23
SHKBP1-223ENST00000600552 TMPRSS11BQ86T26 416 aa16.51■□□□□ 0.23
SHKBP1-223ENST00000600552 THOC6Q86W42 341 aaKnown RBP16.51■□□□□ 0.23
SHKBP1-223ENST00000600552 RPS19BP1Q86WX3 136 aaKnown RBP16.51■□□□□ 0.23
SHKBP1-223ENST00000600552 PDIK1LQ8N165 341 aa16.51■□□□□ 0.23
SHKBP1-223ENST00000600552 TMEM178AQ8NBL3 297 aa16.51■□□□□ 0.23
SHKBP1-223ENST00000600552 OR4K1Q8NGD4 311 aa16.51■□□□□ 0.23
SHKBP1-223ENST00000600552 FAM45AQ8TCE6 357 aa16.51■□□□□ 0.23
SHKBP1-223ENST00000600552 TRIM31Q9BZY9 425 aa16.51■□□□□ 0.23
SHKBP1-223ENST00000600552 KLHL31Q9H511 634 aa16.51■□□□□ 0.23
SHKBP1-223ENST00000600552 PRM3Q9NNZ6 103 aa16.51■□□□□ 0.23
SHKBP1-223ENST00000600552 LRFN1Q9P244 771 aa16.51■□□□□ 0.23
SHKBP1-223ENST00000600552 CTAGE15A4D2H0 777 aa16.5■□□□□ 0.23
SHKBP1-223ENST00000600552 MLYCDO95822 493 aa16.5■□□□□ 0.23
SHKBP1-223ENST00000600552 SP1P08047 785 aa16.5■□□□□ 0.23
SHKBP1-223ENST00000600552 MAOAP21397 527 aa16.5■□□□□ 0.23
SHKBP1-223ENST00000600552 SCTRP47872 440 aa16.5■□□□□ 0.23
SHKBP1-223ENST00000600552 HSF1Q00613 529 aa16.5■□□□□ 0.23
SHKBP1-223ENST00000600552 ZNF460Q14592 562 aa16.5■□□□□ 0.23
SHKBP1-223ENST00000600552 ZNF800Q2TB10 664 aaPredicted RBP eCLIP16.5■□□□□ 0.23
SHKBP1-223ENST00000600552 ZNF468Q5VIY5 522 aaPredicted RBP16.5■□□□□ 0.23
SHKBP1-223ENST00000600552 SLC25A25Q6KCM7 469 aa16.5■□□□□ 0.23
SHKBP1-223ENST00000600552 MTFR2Q6P444 385 aa16.5■□□□□ 0.23
SHKBP1-223ENST00000600552 NCCRP1Q6ZVX7 275 aaPredicted RBP16.5■□□□□ 0.23
SHKBP1-223ENST00000600552 CTAGE6Q86UF2 777 aa16.5■□□□□ 0.23
SHKBP1-223ENST00000600552 CNTN4Q8IWV2 1026 aa16.5■□□□□ 0.23
SHKBP1-223ENST00000600552 ZNF808Q8N4W9 903 aaPredicted RBP16.5■□□□□ 0.23
SHKBP1-223ENST00000600552 AFAP1L2Q8N4X5 818 aa16.5■□□□□ 0.23
SHKBP1-223ENST00000600552 HORMAD2Q8N7B1 307 aa16.5■□□□□ 0.23
SHKBP1-223ENST00000600552 FAM98AQ8NCA5 519 aaKnown RBP16.5■□□□□ 0.23
SHKBP1-223ENST00000600552 NT5CQ8TCD5 201 aa16.5■□□□□ 0.23
SHKBP1-223ENST00000600552 UTP15Q8TED0 518 aaKnown RBP16.5■□□□□ 0.23
SHKBP1-223ENST00000600552 THAP3Q8WTV1 239 aaPredicted RBP16.5■□□□□ 0.23
SHKBP1-223ENST00000600552 SREK1Q8WXA9 508 aaKnown RBP16.5■□□□□ 0.23
SHKBP1-223ENST00000600552 CCT6BQ92526 530 aa16.5■□□□□ 0.23
SHKBP1-223ENST00000600552 AIF1LQ9BQI0 150 aa16.5■□□□□ 0.23
SHKBP1-223ENST00000600552 ZFP69BQ9UJL9 534 aa16.5■□□□□ 0.23
SHKBP1-223ENST00000600552 SLC22A14Q9Y267 594 aa16.5■□□□□ 0.23
SHKBP1-223ENST00000600552 A0A0G2JN53 185 aa16.49■□□□□ 0.23
SHKBP1-223ENST00000600552 ZSCAN12O43309 604 aa16.49■□□□□ 0.23
SHKBP1-223ENST00000600552 COX6B1P14854 86 aa16.49■□□□□ 0.23
SHKBP1-223ENST00000600552 ABOP16442 354 aa16.49■□□□□ 0.23
SHKBP1-223ENST00000600552 TPP2P29144 1249 aaPredicted RBP16.49■□□□□ 0.23
SHKBP1-223ENST00000600552 C18orf21Q32NC0 220 aaPredicted RBP16.49■□□□□ 0.23
SHKBP1-223ENST00000600552 NXPE4Q6UWF7 544 aa16.49■□□□□ 0.23
SHKBP1-223ENST00000600552 C3P1Q6ZMU1 363 aa16.49■□□□□ 0.23
SHKBP1-223ENST00000600552 SCMH1Q96GD3 660 aa16.49■□□□□ 0.23
SHKBP1-223ENST00000600552 GPR137Q96N19 417 aa16.49■□□□□ 0.23
SHKBP1-223ENST00000600552 TRIM51Q9BSJ1 452 aa16.49■□□□□ 0.23
SHKBP1-223ENST00000600552 PLAC1Q9HBJ0 212 aa16.49■□□□□ 0.23
SHKBP1-223ENST00000600552 ABCA12Q86UK0 2595 aa16.49■□□□□ 0.23
SHKBP1-223ENST00000600552 GTF3C1Q12789 2109 aa16.49■□□□□ 0.23
SHKBP1-223ENST00000600552 ENO2P09104 434 aaPredicted RBP16.48■□□□□ 0.23
SHKBP1-223ENST00000600552 RNH1P13489 461 aaKnown RBP16.48■□□□□ 0.23
SHKBP1-223ENST00000600552 RFC3P40938 356 aa16.48■□□□□ 0.23
SHKBP1-223ENST00000600552 ITGA8P53708 1063 aa16.48■□□□□ 0.23
SHKBP1-223ENST00000600552 BTN3A2P78410 334 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms