RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 ARHGEF9O43307 516 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 TPST2O60704 377 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 SLC10A3P09131 477 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 LHCGRP22888 699 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 CEP78Q5JTW2 689 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 Q6ZVL8 140 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 Q6ZVU0 165 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 PARP16Q8N5Y8 322 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 MYDGFQ969H8 173 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 OR5M11Q96RB7 305 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 PKP4Q99569 1192 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 CNPPD1Q9BV87 410 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 MTG2Q9H4K7 406 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 TOR4AQ9NXH8 423 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 LOC110117498-PIK3R3F6TDL0 507 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 M0R082 166 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 RPLP0P05388 317 aaKnown RBP14.7□□□□□ -0.06
UPF1-204ENST00000596842 GRK3P35626 688 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 TGFBR2P37173 567 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 RPS26P62854 115 aaKnown RBP14.7□□□□□ -0.06
UPF1-204ENST00000596842 FKBP1BP68106 108 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 CCDC58Q4VC31 144 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 MACC1Q6ZN28 852 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 USP45Q70EL2 814 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 NATD1Q8N6N6 113 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 PHF10Q8WUB8 498 aaKnown RBP14.7□□□□□ -0.06
UPF1-204ENST00000596842 CIDECQ96AQ7 238 aaPredicted RBP14.7□□□□□ -0.06
UPF1-204ENST00000596842 CCM2Q9BSQ5 444 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 CCDC177Q9NQR7 707 aaPredicted RBP14.7□□□□□ -0.06
UPF1-204ENST00000596842 TMEM45AQ9NWC5 275 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 QPCTLQ9NXS2 382 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 B4GALT6Q9UBX8 382 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 ABT1Q9ULW3 272 aaKnown RBP14.7□□□□□ -0.06
UPF1-204ENST00000596842 PCDHGB3Q9Y5G1 929 aa14.7□□□□□ -0.06
UPF1-204ENST00000596842 H3BN98 237 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 TNFRSF21O75509 655 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 RFPL2O75678 378 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 CD22P20273 847 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 SRSF11Q05519 484 aaKnown RBP14.69□□□□□ -0.06
UPF1-204ENST00000596842 LEXMQ3ZCV2 418 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 ZC3H12BQ5HYM0 836 aaKnown RBP14.69□□□□□ -0.06
UPF1-204ENST00000596842 CBLL1Q75N03 491 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 SERPINA11Q86U17 422 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 ANKMY1Q9P2S6 941 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 UNC80Q8N2C7 3258 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 AGAP5A6NIR3 686 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 TNFRSF10AO00220 468 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 KCNK2O95069 426 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 C6orf47O95873 294 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 HLA-EP13747 358 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 JUNDP17535 347 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 RPS3P23396 243 aaKnown RBP eCLIP14.69□□□□□ -0.063e-6■■■■□ 21.7
UPF1-204ENST00000596842 GABRR2P28476 465 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 RPS13P62277 151 aaKnown RBP14.69□□□□□ -0.06
UPF1-204ENST00000596842 KCNC4Q03721 635 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 THOC6Q86W42 341 aaKnown RBP14.69□□□□□ -0.06
UPF1-204ENST00000596842 LSRQ86X29 649 aaPredicted RBP14.69□□□□□ -0.06
UPF1-204ENST00000596842 C11orf65Q8NCR3 313 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 KLF16Q9BXK1 252 aaPredicted RBP14.69□□□□□ -0.06
UPF1-204ENST00000596842 OR51B5Q9H339 312 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 FBXO8Q9NRD0 319 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 NAALAD2Q9Y3Q0 740 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 CASP8AP2Q9UKL3 1982 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 PCDH17O14917 1159 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 PQBP1O60828 265 aaKnown RBP14.69□□□□□ -0.06
UPF1-204ENST00000596842 DNAJB5O75953 348 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 APOL3O95236 402 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 CD9P21926 228 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 TGM4P49221 684 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 ELAVL2Q12926 359 aaKnown RBP14.69□□□□□ -0.06
UPF1-204ENST00000596842 KLHL17Q6TDP4 642 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 DPY19L3Q6ZPD9 716 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 PTCHD4Q6ZW05 846 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 FAM20CQ8IXL6 584 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 DCAF4L2Q8NA75 395 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 CHST14Q8NCH0 376 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 OR2AP1Q8NGE2 309 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 CTPS2Q9NRF8 586 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 MAN2B2Q9Y2E5 1009 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 UGT2A1Q9Y4X1 527 aa14.69□□□□□ -0.06
UPF1-204ENST00000596842 XPAP23025 273 aaPredicted RBP14.68□□□□□ -0.06
UPF1-204ENST00000596842 MAGEA2P43356 314 aa14.68□□□□□ -0.06
UPF1-204ENST00000596842 CAMK2BQ13554 666 aa14.68□□□□□ -0.06
UPF1-204ENST00000596842 OTOP2Q7RTS6 562 aa14.68□□□□□ -0.06
UPF1-204ENST00000596842 FAM9CQ8IZT9 166 aa14.68□□□□□ -0.06
UPF1-204ENST00000596842 TMEM203Q969S6 136 aa14.68□□□□□ -0.06
UPF1-204ENST00000596842 PCDHB11Q9Y5F2 797 aa14.68□□□□□ -0.06
UPF1-204ENST00000596842 KIAA0513O60268 411 aa14.68□□□□□ -0.06
UPF1-204ENST00000596842 ALDH9A1P49189 494 aa14.68□□□□□ -0.06
UPF1-204ENST00000596842 PTSQ03393 145 aa14.68□□□□□ -0.06
UPF1-204ENST00000596842 ZFP69Q49AA0 526 aa14.68□□□□□ -0.06
UPF1-204ENST00000596842 GPR33Q49SQ1 333 aa14.68□□□□□ -0.06
UPF1-204ENST00000596842 LRRC70Q7Z2Q7 622 aa14.68□□□□□ -0.06
UPF1-204ENST00000596842 BCDIN3DQ7Z5W3 292 aaKnown RBP14.68□□□□□ -0.06
UPF1-204ENST00000596842 METTL4Q8N3J2 472 aa14.68□□□□□ -0.06
UPF1-204ENST00000596842 OR7G1Q8NGA0 311 aa14.68□□□□□ -0.06
UPF1-204ENST00000596842 ZNF566Q969W8 418 aa14.68□□□□□ -0.06
UPF1-204ENST00000596842 TMEM159Q96B96 161 aa14.68□□□□□ -0.06
UPF1-204ENST00000596842 TESCQ96BS2 214 aa14.68□□□□□ -0.06
UPF1-204ENST00000596842 ITPKCQ96DU7 683 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms