RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 NSUN5Q96P11 429 aaKnown RBP10.55□□□□□ -0.72
VRK3-210ENST00000596121 CRB3Q9BUF7 120 aa10.55□□□□□ -0.72
VRK3-210ENST00000596121 CAPS2Q9BXY5 557 aa10.55□□□□□ -0.72
VRK3-210ENST00000596121 PARD6BQ9BYG5 372 aa10.55□□□□□ -0.72
VRK3-210ENST00000596121 ADNPQ9H2P0 1102 aa10.55□□□□□ -0.72
VRK3-210ENST00000596121 ZBTB26Q9HCK0 441 aa10.55□□□□□ -0.72
VRK3-210ENST00000596121 MLXIPLQ9NP71 852 aa10.55□□□□□ -0.72
VRK3-210ENST00000596121 MKKSQ9NPJ1 570 aaPredicted RBP10.55□□□□□ -0.72
VRK3-210ENST00000596121 ACSS2Q9NR19 701 aa10.55□□□□□ -0.72
VRK3-210ENST00000596121 LANCL2Q9NS86 450 aa10.55□□□□□ -0.72
VRK3-210ENST00000596121 PSMC3IPQ9P2W1 217 aaPredicted RBP10.55□□□□□ -0.72
VRK3-210ENST00000596121 OPTCQ9UBM4 332 aa10.55□□□□□ -0.72
VRK3-210ENST00000596121 C3orf18Q9UK00 162 aa10.55□□□□□ -0.72
VRK3-210ENST00000596121 NXT1Q9UKK6 140 aaKnown RBP10.55□□□□□ -0.72
VRK3-210ENST00000596121 A0A0G2JN53 185 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 A0A1B0GTL3 188 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 LRIT2A6NDA9 550 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 A6NL46 340 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 SMIM23A6NLE4 172 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 IDSB3KWA1 339 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 E2F3O00716 465 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 PPP6CO00743 305 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 OR7A17O14581 309 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 RBP1P09455 135 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 XCR1P46094 333 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 IRF8Q02556 426 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 OCA2Q04671 838 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 RAPSNQ13702 412 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 DCAF10Q5QP82 559 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 LGSNQ5TDP6 509 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 FAAH2Q6GMR7 532 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 KLC3Q6P597 504 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 PTRH1Q86Y79 214 aaKnown RBP10.54□□□□□ -0.72
VRK3-210ENST00000596121 TDRPQ86YL5 185 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 LAS2Q8IYD9 372 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 TRPV3Q8NET8 790 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 FDCSPQ8NFU4 85 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 OR11G2Q8NGC1 345 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 MS4A6EQ96DS6 147 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 MTBPQ96DY7 904 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 F2RL3Q96RI0 385 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 MRPL57Q9BQC6 102 aaKnown RBP10.54□□□□□ -0.72
VRK3-210ENST00000596121 RBCK1Q9BYM8 510 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 SLC25A18Q9H1K4 315 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 RHBGQ9H310 441 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 ANKHQ9HCJ1 492 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 SEMA3GQ9NS98 782 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 TUBD1Q9UJT1 453 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 FBXL4Q9UKA2 621 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 EMCNQ9ULC0 261 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 TP53TG5Q9Y2B4 290 aa10.54□□□□□ -0.72
VRK3-210ENST00000596121 FASNP49327 2511 aaKnown RBP10.54□□□□□ -0.72
VRK3-210ENST00000596121 IQANK1A0A1B0GTG1 560 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 A8MT66 165 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 FAM227AF5H4B4 570 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 AGPSO00116 658 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 PRPF4O43172 522 aaKnown RBP eCLIP10.53□□□□□ -0.72
VRK3-210ENST00000596121 CHST10O43529 356 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 DLX3O60479 287 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 SH3BGRLO75368 114 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 CLEC3AO75596 197 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 EPB42P16452 691 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 CXCR2P25025 360 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 EEF1DP29692 281 aaKnown RBP10.53□□□□□ -0.72
VRK3-210ENST00000596121 EMP2P54851 167 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 RGS1Q08116 209 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 NFATC3Q12968 1075 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 GTF2H2Q13888 395 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 RUNX2Q13950 521 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 HERC3Q15034 1050 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 RBBP7Q16576 425 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 TSNAXIP1Q2TAA8 658 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 ADPRMQ3LIE5 342 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 GTF2H2CQ6P1K8 395 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 MED25Q71SY5 747 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 KRT78Q8N1N4 520 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 TBC1D19Q8N5T2 526 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 TMEM102Q8N9M5 508 aaPredicted RBP10.53□□□□□ -0.72
VRK3-210ENST00000596121 OR7G3Q8NG95 312 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 OR52B6Q8NGF0 335 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 C9orf43Q8TAL5 461 aaPredicted RBP10.53□□□□□ -0.72
VRK3-210ENST00000596121 ZNF473Q8WTR7 871 aaKnown RBP10.53□□□□□ -0.72
VRK3-210ENST00000596121 PEX11GQ96HA9 241 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 QRFPRQ96P65 431 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 CDK15Q96Q40 435 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 EFCAB11Q9BUY7 163 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 NUDT9Q9BW91 350 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 PITHD1Q9GZP4 211 aaPredicted RBP10.53□□□□□ -0.72
VRK3-210ENST00000596121 VN1R1Q9GZP7 353 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 MRPL46Q9H2W6 279 aaKnown RBP10.53□□□□□ -0.72
VRK3-210ENST00000596121 C12orf65Q9H3J6 166 aaKnown RBP10.53□□□□□ -0.72
VRK3-210ENST00000596121 NOL11Q9H8H0 719 aaKnown RBP10.53□□□□□ -0.72
VRK3-210ENST00000596121 IPPKQ9H8X2 491 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 PCTPQ9UKL6 214 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 MKL2Q9ULH7 1088 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 RNF11Q9Y3C5 154 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 TNRC6AQ8NDV7 1962 aaKnown RBP10.53□□□□□ -0.72
VRK3-210ENST00000596121 BAHCC1Q9P281 2608 aa10.53□□□□□ -0.72
VRK3-210ENST00000596121 IGHV3-20A0A0C4DH32 117 aa10.52□□□□□ -0.73
VRK3-210ENST00000596121 STX16-NPEPL1H3BU86 382 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms