RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 NT5CQ8TCD5 201 aa19.27■□□□□ 0.68
SHMT1-209ENST00000582653 PYROXD1Q8WU10 500 aa19.27■□□□□ 0.68
SHMT1-209ENST00000582653 TSLPQ969D9 159 aa19.27■□□□□ 0.68
SHMT1-209ENST00000582653 MCMBPQ9BTE3 642 aa19.27■□□□□ 0.68
SHMT1-209ENST00000582653 RHOJQ9H4E5 214 aa19.27■□□□□ 0.68
SHMT1-209ENST00000582653 CAB39LQ9H9S4 337 aa19.27■□□□□ 0.68
SHMT1-209ENST00000582653 GPAMQ9HCL2 828 aa19.27■□□□□ 0.68
SHMT1-209ENST00000582653 ZFP69BQ9UJL9 534 aa19.27■□□□□ 0.68
SHMT1-209ENST00000582653 MTO1Q9Y2Z2 717 aaKnown RBP19.27■□□□□ 0.68
SHMT1-209ENST00000582653 PCDHGB6Q9Y5F9 930 aa19.27■□□□□ 0.68
SHMT1-209ENST00000582653 ITPR2Q14571 2701 aa19.26■□□□□ 0.67
SHMT1-209ENST00000582653 CXorf49A8MYA2 514 aaPredicted RBP19.26■□□□□ 0.67
SHMT1-209ENST00000582653 CHST10O43529 356 aa19.26■□□□□ 0.67
SHMT1-209ENST00000582653 ALOX12P18054 663 aa19.26■□□□□ 0.67
SHMT1-209ENST00000582653 GDF5P43026 501 aa19.26■□□□□ 0.67
SHMT1-209ENST00000582653 KCNK10P57789 538 aa19.26■□□□□ 0.67
SHMT1-209ENST00000582653 RGS1Q08116 209 aa19.26■□□□□ 0.67
SHMT1-209ENST00000582653 CBLBQ13191 982 aa19.26■□□□□ 0.67
SHMT1-209ENST00000582653 ABRAXAS2Q15018 415 aa19.26■□□□□ 0.67
SHMT1-209ENST00000582653 RBBP5Q15291 538 aaKnown RBP19.26■□□□□ 0.67
SHMT1-209ENST00000582653 NSDHLQ15738 373 aa19.26■□□□□ 0.67
SHMT1-209ENST00000582653 EXT1Q16394 746 aa19.26■□□□□ 0.67
SHMT1-209ENST00000582653 SFT2D3Q587I9 215 aa19.26■□□□□ 0.67
SHMT1-209ENST00000582653 ACER2Q5QJU3 275 aa19.26■□□□□ 0.67
SHMT1-209ENST00000582653 NXPE4Q6UWF7 544 aa19.26■□□□□ 0.67
SHMT1-209ENST00000582653 GFRALQ6UXV0 394 aa19.26■□□□□ 0.67
SHMT1-209ENST00000582653 TMPRSS11BQ86T26 416 aa19.26■□□□□ 0.67
SHMT1-209ENST00000582653 ZGRF1Q86YA3 2104 aa19.26■□□□□ 0.67
SHMT1-209ENST00000582653 TBC1D19Q8N5T2 526 aa19.26■□□□□ 0.67
SHMT1-209ENST00000582653 SPATA4Q8NEY3 305 aa19.26■□□□□ 0.67
SHMT1-209ENST00000582653 M1APQ8TC57 530 aa19.26■□□□□ 0.67
SHMT1-209ENST00000582653 ANKRD7Q92527 254 aa19.26■□□□□ 0.67
SHMT1-209ENST00000582653 VPS39Q96JC1 886 aa19.26■□□□□ 0.67
SHMT1-209ENST00000582653 ERP44Q9BS26 406 aa19.26■□□□□ 0.67
SHMT1-209ENST00000582653 SAYSD1Q9NPB0 183 aa19.26■□□□□ 0.67
SHMT1-209ENST00000582653 CTNNAL1Q9UBT7 734 aa19.26■□□□□ 0.67
SHMT1-209ENST00000582653 OARD1Q9Y530 152 aa19.26■□□□□ 0.67
SHMT1-209ENST00000582653 RAD51CO43502 376 aa19.25■□□□□ 0.67
SHMT1-209ENST00000582653 B4GALT2O60909 372 aa19.25■□□□□ 0.67
SHMT1-209ENST00000582653 RAB8AP61006 207 aa19.25■□□□□ 0.67
SHMT1-209ENST00000582653 REEP5Q00765 189 aa19.25■□□□□ 0.67
SHMT1-209ENST00000582653 ACTN3Q08043 901 aaPredicted RBP19.25■□□□□ 0.67
SHMT1-209ENST00000582653 C2orf54Q08AI8 447 aa19.25■□□□□ 0.67
SHMT1-209ENST00000582653 HYAL2Q12891 473 aa19.25■□□□□ 0.67
SHMT1-209ENST00000582653 C1QL3Q5VWW1 255 aa19.25■□□□□ 0.67
SHMT1-209ENST00000582653 SP5Q6BEB4 398 aaPredicted RBP19.25■□□□□ 0.67
SHMT1-209ENST00000582653 TICAM1Q8IUC6 712 aa19.25■□□□□ 0.67
SHMT1-209ENST00000582653 C17orf53Q8N3J3 647 aaPredicted RBP19.25■□□□□ 0.67
SHMT1-209ENST00000582653 BBOF1Q8ND07 529 aa19.25■□□□□ 0.67
SHMT1-209ENST00000582653 UTP15Q8TED0 518 aaKnown RBP19.25■□□□□ 0.67
SHMT1-209ENST00000582653 TBC1D20Q96BZ9 403 aa19.25■□□□□ 0.67
SHMT1-209ENST00000582653 OR1F2PQ96R84 312 aa19.25■□□□□ 0.67
SHMT1-209ENST00000582653 AIF1LQ9BQI0 150 aa19.25■□□□□ 0.67
SHMT1-209ENST00000582653 KLHL31Q9H511 634 aa19.25■□□□□ 0.67
SHMT1-209ENST00000582653 PELI2Q9HAT8 420 aa19.25■□□□□ 0.67
SHMT1-209ENST00000582653 KCNK13Q9HB14 408 aa19.25■□□□□ 0.67
SHMT1-209ENST00000582653 MMP25Q9NPA2 562 aa19.25■□□□□ 0.67
SHMT1-209ENST00000582653 NSMCE4AQ9NXX6 385 aa19.25■□□□□ 0.67
SHMT1-209ENST00000582653 KCNE2Q9Y6J6 123 aa19.25■□□□□ 0.67
SHMT1-209ENST00000582653 CENPEQ02224 2701 aa19.25■□□□□ 0.67
SHMT1-209ENST00000582653 FAM187AA6NFU0 413 aa19.24■□□□□ 0.67
SHMT1-209ENST00000582653 NCF1BA6NI72 391 aaPredicted RBP19.24■□□□□ 0.67
SHMT1-209ENST00000582653 NCF1CA8MVU1 366 aaPredicted RBP19.24■□□□□ 0.67
SHMT1-209ENST00000582653 WDR47O94967 919 aa19.24■□□□□ 0.67
SHMT1-209ENST00000582653 FHP07954 510 aa19.24■□□□□ 0.67
SHMT1-209ENST00000582653 NCF1P14598 390 aaPredicted RBP19.24■□□□□ 0.67
SHMT1-209ENST00000582653 MST1P26927 711 aa19.24■□□□□ 0.67
SHMT1-209ENST00000582653 AHRP35869 848 aa19.24■□□□□ 0.67
SHMT1-209ENST00000582653 SLC12A2P55011 1212 aa19.24■□□□□ 0.67
SHMT1-209ENST00000582653 CDKL1Q00532 357 aa19.24■□□□□ 0.67
SHMT1-209ENST00000582653 CALCOCO2Q13137 446 aa19.24■□□□□ 0.67
SHMT1-209ENST00000582653 MEP1AQ16819 746 aa19.24■□□□□ 0.67
SHMT1-209ENST00000582653 PAPD4Q6PIY7 484 aaKnown RBP19.24■□□□□ 0.67
SHMT1-209ENST00000582653 FRA10AC1Q70Z53 315 aa19.24■□□□□ 0.67
SHMT1-209ENST00000582653 RHBDF1Q96CC6 855 aa19.24■□□□□ 0.67
SHMT1-209ENST00000582653 SLC6A16Q9GZN6 736 aa19.24■□□□□ 0.67
SHMT1-209ENST00000582653 GRHL1Q9NZI5 618 aa19.24■□□□□ 0.67
SHMT1-209ENST00000582653 WHRNQ9P202 907 aa19.24■□□□□ 0.67
SHMT1-209ENST00000582653 SEC14L3Q9UDX4 400 aa19.24■□□□□ 0.67
SHMT1-209ENST00000582653 ENTPD4Q9Y227 616 aa19.24■□□□□ 0.67
SHMT1-209ENST00000582653 CPAMD8Q8IZJ3 1885 aa19.24■□□□□ 0.67
SHMT1-209ENST00000582653 CROCCQ5TZA2 2017 aa19.24■□□□□ 0.67
SHMT1-209ENST00000582653 MAGEB17A8MXT2 336 aa19.23■□□□□ 0.67
SHMT1-209ENST00000582653 C4orf51C9J302 202 aa19.23■□□□□ 0.67
SHMT1-209ENST00000582653 NDC80O14777 642 aa19.23■□□□□ 0.67
SHMT1-209ENST00000582653 PHGDHO43175 533 aaKnown RBP19.23■□□□□ 0.67
SHMT1-209ENST00000582653 MAN1A2O60476 641 aa19.23■□□□□ 0.67
SHMT1-209ENST00000582653 UNC5CO95185 931 aa19.23■□□□□ 0.67
SHMT1-209ENST00000582653 BTG2P78543 158 aa19.23■□□□□ 0.67
SHMT1-209ENST00000582653 ZNF800Q2TB10 664 aaPredicted RBP eCLIP19.23■□□□□ 0.67
SHMT1-209ENST00000582653 ZNF766Q5HY98 468 aa19.23■□□□□ 0.67
SHMT1-209ENST00000582653 NIPAL1Q6NVV3 410 aa19.23■□□□□ 0.67
SHMT1-209ENST00000582653 ABHD13Q7L211 337 aa19.23■□□□□ 0.67
SHMT1-209ENST00000582653 MAATS1Q7Z4T9 603 aa19.23■□□□□ 0.67
SHMT1-209ENST00000582653 ADAMTSL2Q86TH1 951 aa19.23■□□□□ 0.67
SHMT1-209ENST00000582653 BEST3Q8N1M1 668 aa19.23■□□□□ 0.67
SHMT1-209ENST00000582653 CREB3L4Q8TEY5 395 aa19.23■□□□□ 0.67
SHMT1-209ENST00000582653 LPAR4Q99677 370 aa19.23■□□□□ 0.67
SHMT1-209ENST00000582653 NPAS2Q99743 824 aa19.23■□□□□ 0.67
SHMT1-209ENST00000582653 AICDAQ9GZX7 198 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms