RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 RDH16O75452 317 aa12.31□□□□□ -0.44
CLK3-224ENST00000568605 SHBGP04278 402 aa12.31□□□□□ -0.44
CLK3-224ENST00000568605 UMODP07911 640 aa12.31□□□□□ -0.44
CLK3-224ENST00000568605 ZNF888P0CJ79 500 aaPredicted RBP12.31□□□□□ -0.44
CLK3-224ENST00000568605 JAK1P23458 1154 aa12.31□□□□□ -0.44
CLK3-224ENST00000568605 EEF1DP29692 281 aaKnown RBP12.31□□□□□ -0.44
CLK3-224ENST00000568605 DEKP35659 375 aaKnown RBP12.31□□□□□ -0.44
CLK3-224ENST00000568605 CASP2P42575 452 aa12.31□□□□□ -0.44
CLK3-224ENST00000568605 KLC1Q07866 573 aa12.31□□□□□ -0.44
CLK3-224ENST00000568605 PCDH1Q08174 1060 aa12.31□□□□□ -0.44
CLK3-224ENST00000568605 E2F2Q14209 437 aa12.31□□□□□ -0.44
CLK3-224ENST00000568605 LY6DQ14210 128 aa12.31□□□□□ -0.44
CLK3-224ENST00000568605 TUBB8Q3ZCM7 444 aa12.31□□□□□ -0.44
CLK3-224ENST00000568605 SOWAHCQ53LP3 525 aaPredicted RBP12.31□□□□□ -0.44
CLK3-224ENST00000568605 TOR1AIP1Q5JTV8 583 aa12.31□□□□□ -0.44
CLK3-224ENST00000568605 MFSD4BQ5TF39 518 aa12.31□□□□□ -0.44
CLK3-224ENST00000568605 FAM69BQ5VUD6 431 aa12.31□□□□□ -0.44
CLK3-224ENST00000568605 IRAK1BP1Q5VVH5 260 aa12.31□□□□□ -0.44
CLK3-224ENST00000568605 LIPJQ5W064 366 aa12.31□□□□□ -0.44
CLK3-224ENST00000568605 GRHL2Q6ISB3 625 aa12.31□□□□□ -0.44
CLK3-224ENST00000568605 AFAP1L2Q8N4X5 818 aa12.31□□□□□ -0.44
CLK3-224ENST00000568605 SRFBP1Q8NEF9 429 aaKnown RBP12.31□□□□□ -0.44
CLK3-224ENST00000568605 OR51Q1Q8NH59 317 aa12.31□□□□□ -0.44
CLK3-224ENST00000568605 C9orf43Q8TAL5 461 aaPredicted RBP12.31□□□□□ -0.44
CLK3-224ENST00000568605 ATP6V1E2Q96A05 226 aa12.31□□□□□ -0.44
CLK3-224ENST00000568605 OR1F2PQ96R84 312 aa12.31□□□□□ -0.44
CLK3-224ENST00000568605 MACROD1Q9BQ69 325 aa12.31□□□□□ -0.44
CLK3-224ENST00000568605 CENPKQ9BS16 269 aa12.31□□□□□ -0.44
CLK3-224ENST00000568605 ING2Q9H160 280 aa12.31□□□□□ -0.44
CLK3-224ENST00000568605 COPS7BQ9H9Q2 264 aaPredicted RBP12.31□□□□□ -0.44
CLK3-224ENST00000568605 CLK4Q9HAZ1 481 aaKnown RBP12.31□□□□□ -0.44
CLK3-224ENST00000568605 P4HTMQ9NXG6 502 aa12.31□□□□□ -0.44
CLK3-224ENST00000568605 HCN3Q9P1Z3 774 aa12.31□□□□□ -0.44
CLK3-224ENST00000568605 C19orf25Q9UFG5 118 aaPredicted RBP12.31□□□□□ -0.44
CLK3-224ENST00000568605 C3orf18Q9UK00 162 aa12.31□□□□□ -0.44
CLK3-224ENST00000568605 RALYQ9UKM9 306 aaKnown RBP12.31□□□□□ -0.44
CLK3-224ENST00000568605 MRPS2Q9Y399 296 aaKnown RBP12.31□□□□□ -0.44
CLK3-224ENST00000568605 ASB1Q9Y576 335 aa12.31□□□□□ -0.44
CLK3-224ENST00000568605 CROCCQ5TZA2 2017 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 IDSB3KWA1 339 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 GOLGA8RI6L899 631 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 SGK494L7N484 410 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 PSMD12O00232 456 aaPredicted RBP12.3□□□□□ -0.44
CLK3-224ENST00000568605 E2F3O00716 465 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 WFS1O76024 890 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 HEXBP07686 556 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 PYGBP11216 843 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 PCNAP12004 261 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 ACPPP15309 386 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 EPORP19235 508 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 XCR1P46094 333 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 CCT5P48643 541 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 CCNG1P51959 295 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 EMP2P54851 167 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 MINDY4Q4G0A6 757 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 DEFB134Q4QY38 66 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 VWA2Q5GFL6 755 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 C10orf62Q5T681 223 aaPredicted RBP12.3□□□□□ -0.44
CLK3-224ENST00000568605 CPZQ66K79 652 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 PCSK4Q6UW60 755 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 SHISA6Q6ZSJ9 500 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 PRSS41Q7RTY9 318 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 GOLGA7Q7Z5G4 137 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 PPP1R32Q7Z5V6 425 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 SLC22A9Q8IVM8 553 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 ZC3H7AQ8IWR0 971 aaKnown RBP12.3□□□□□ -0.44
CLK3-224ENST00000568605 PRSS58Q8IYP2 241 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 MREGQ8N565 214 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 OR2L5Q8NG80 312 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 ADAMTS18Q8TE60 1221 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 UTP15Q8TED0 518 aaKnown RBP12.3□□□□□ -0.44
CLK3-224ENST00000568605 CREB3L4Q8TEY5 395 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 MZB1Q8WU39 189 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 METTL21AQ8WXB1 218 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 CCDC126Q96EE4 140 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 PHF21BQ96EK2 531 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 MOCOSQ96EN8 888 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 BBC3Q96PG8 261 aaPredicted RBP12.3□□□□□ -0.44
CLK3-224ENST00000568605 PARD6BQ9BYG5 372 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 ROGDIQ9GZN7 287 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 IQCGQ9H095 443 aaKnown RBP12.3□□□□□ -0.44
CLK3-224ENST00000568605 RHBGQ9H310 441 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 IPPKQ9H8X2 491 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 MID2Q9UJV3 735 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 STK38LQ9Y2H1 464 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 PCDHGA11Q9Y5H2 935 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 SPTA1P02549 2419 aa12.3□□□□□ -0.44
CLK3-224ENST00000568605 ZNF860A6NHJ4 632 aa12.29□□□□□ -0.44
CLK3-224ENST00000568605 A8MT66 165 aa12.29□□□□□ -0.44
CLK3-224ENST00000568605 FFAR3O14843 346 aa12.29□□□□□ -0.44
CLK3-224ENST00000568605 GPR42O15529 346 aa12.29□□□□□ -0.44
CLK3-224ENST00000568605 ERI3O43414 337 aaKnown RBP12.29□□□□□ -0.44
CLK3-224ENST00000568605 SIX3O95343 332 aaPredicted RBP12.29□□□□□ -0.44
CLK3-224ENST00000568605 BMP10O95393 424 aa12.29□□□□□ -0.44
CLK3-224ENST00000568605 RPS17P08708 135 aaKnown RBP12.29□□□□□ -0.44
CLK3-224ENST00000568605 RAB8AP61006 207 aa12.29□□□□□ -0.44
CLK3-224ENST00000568605 AP2B1P63010 937 aa12.29□□□□□ -0.44
CLK3-224ENST00000568605 HERVK_113P63132 956 aa12.29□□□□□ -0.44
CLK3-224ENST00000568605 MAT1AQ00266 395 aaKnown RBP12.29□□□□□ -0.44
CLK3-224ENST00000568605 CHAF1BQ13112 559 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms