RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 STEAP4Q687X5 459 aa16.08■□□□□ 0.16
CLN3-216ENST00000565316 SPINK14Q6IE38 97 aa16.08■□□□□ 0.16
CLN3-216ENST00000565316 SBSNQ6UWP8 590 aa16.08■□□□□ 0.16
CLN3-216ENST00000565316 MRGPRGQ86SM5 289 aa16.08■□□□□ 0.16
CLN3-216ENST00000565316 TBC1D19Q8N5T2 526 aa16.08■□□□□ 0.16
CLN3-216ENST00000565316 SLC5A11Q8WWX8 675 aa16.08■□□□□ 0.16
CLN3-216ENST00000565316 NEIL2Q969S2 332 aa16.08■□□□□ 0.16
CLN3-216ENST00000565316 GPR137Q96N19 417 aa16.08■□□□□ 0.16
CLN3-216ENST00000565316 OLFM1Q99784 485 aa16.08■□□□□ 0.16
CLN3-216ENST00000565316 HES7Q9BYE0 225 aa16.08■□□□□ 0.16
CLN3-216ENST00000565316 DDX47Q9H0S4 455 aaKnown RBP16.08■□□□□ 0.16
CLN3-216ENST00000565316 SPNS1Q9H2V7 528 aa16.08■□□□□ 0.16
CLN3-216ENST00000565316 IKZF3Q9UKT9 509 aa16.08■□□□□ 0.16
CLN3-216ENST00000565316 GABRR3A8MPY1 467 aa16.07■□□□□ 0.16
CLN3-216ENST00000565316 NEURL1O76050 574 aa16.07■□□□□ 0.16
CLN3-216ENST00000565316 CD46P15529 392 aa16.07■□□□□ 0.16
CLN3-216ENST00000565316 JAK1P23458 1154 aa16.07■□□□□ 0.16
CLN3-216ENST00000565316 ELK3P41970 407 aa16.07■□□□□ 0.16
CLN3-216ENST00000565316 REEP5Q00765 189 aa16.07■□□□□ 0.16
CLN3-216ENST00000565316 RGS1Q08116 209 aa16.07■□□□□ 0.16
CLN3-216ENST00000565316 CSHL1Q14406 222 aa16.07■□□□□ 0.16
CLN3-216ENST00000565316 PPP1R3AQ16821 1122 aa16.07■□□□□ 0.16
CLN3-216ENST00000565316 ZNF630Q2M218 657 aaPredicted RBP16.07■□□□□ 0.16
CLN3-216ENST00000565316 FAM45BPQ6NSW5 357 aa16.07■□□□□ 0.16
CLN3-216ENST00000565316 TRMT10BQ6PF06 316 aaKnown RBP16.07■□□□□ 0.16
CLN3-216ENST00000565316 BNC2Q6ZN30 1099 aaPredicted RBP16.07■□□□□ 0.16
CLN3-216ENST00000565316 Q6ZPB1 254 aaPredicted RBP16.07■□□□□ 0.16
CLN3-216ENST00000565316 ABHD13Q7L211 337 aa16.07■□□□□ 0.16
CLN3-216ENST00000565316 SIAH3Q8IW03 269 aa16.07■□□□□ 0.16
CLN3-216ENST00000565316 SRRM1Q8IYB3 904 aaKnown RBP16.07■□□□□ 0.16
CLN3-216ENST00000565316 GPATCH11Q8N954 259 aa16.07■□□□□ 0.16
CLN3-216ENST00000565316 TMEM178AQ8NBL3 297 aa16.07■□□□□ 0.16
CLN3-216ENST00000565316 FAM45AQ8TCE6 357 aa16.07■□□□□ 0.16
CLN3-216ENST00000565316 UTP15Q8TED0 518 aaKnown RBP16.07■□□□□ 0.16
CLN3-216ENST00000565316 WDR83Q9BRX9 315 aaKnown RBP16.07■□□□□ 0.16
CLN3-216ENST00000565316 SLC6A16Q9GZN6 736 aa16.07■□□□□ 0.16
CLN3-216ENST00000565316 RUBCNLQ9H714 662 aa16.07■□□□□ 0.16
CLN3-216ENST00000565316 PELI2Q9HAT8 420 aa16.07■□□□□ 0.16
CLN3-216ENST00000565316 PPANQ9NQ55 473 aaKnown RBP16.07■□□□□ 0.16
CLN3-216ENST00000565316 ANKRD10Q9NXR5 420 aa16.07■□□□□ 0.16
CLN3-216ENST00000565316 TEP1Q99973 2627 aaKnown RBP16.07■□□□□ 0.16
CLN3-216ENST00000565316 PCNX1Q96RV3 2341 aa16.06■□□□□ 0.16
CLN3-216ENST00000565316 CTAGE15A4D2H0 777 aa16.06■□□□□ 0.16
CLN3-216ENST00000565316 PABPN1LA6NDY0 278 aaKnown RBP16.06■□□□□ 0.16
CLN3-216ENST00000565316 MLYCDO95822 493 aa16.06■□□□□ 0.16
CLN3-216ENST00000565316 B3GALT4O96024 378 aa16.06■□□□□ 0.16
CLN3-216ENST00000565316 ZNF888P0CJ79 500 aaPredicted RBP16.06■□□□□ 0.16
CLN3-216ENST00000565316 SMIM10L1P0DMW3 83 aa16.06■□□□□ 0.16
CLN3-216ENST00000565316 EEF1DP29692 281 aaKnown RBP16.06■□□□□ 0.16
CLN3-216ENST00000565316 TAS2R50P59544 299 aa16.06■□□□□ 0.16
CLN3-216ENST00000565316 OLR1P78380 273 aa16.06■□□□□ 0.16
CLN3-216ENST00000565316 HYAL2Q12891 473 aa16.06■□□□□ 0.16
CLN3-216ENST00000565316 MORF4L2Q15014 288 aa16.06■□□□□ 0.16
CLN3-216ENST00000565316 C3AR1Q16581 482 aa16.06■□□□□ 0.16
CLN3-216ENST00000565316 QSOX2Q6ZRP7 698 aa16.06■□□□□ 0.16
CLN3-216ENST00000565316 CTAGE6Q86UF2 777 aa16.06■□□□□ 0.16
CLN3-216ENST00000565316 RPS19BP1Q86WX3 136 aaKnown RBP16.06■□□□□ 0.16
CLN3-216ENST00000565316 MCEMP1Q8IX19 187 aa16.06■□□□□ 0.16
CLN3-216ENST00000565316 PDIK1LQ8N165 341 aa16.06■□□□□ 0.16
CLN3-216ENST00000565316 HORMAD2Q8N7B1 307 aa16.06■□□□□ 0.16
CLN3-216ENST00000565316 ANKRD53Q8N9V6 530 aa16.06■□□□□ 0.16
CLN3-216ENST00000565316 ANKRD7Q92527 254 aa16.06■□□□□ 0.16
CLN3-216ENST00000565316 LRRC39Q96DD0 335 aa16.06■□□□□ 0.16
CLN3-216ENST00000565316 SMIM10Q96HG1 83 aa16.06■□□□□ 0.16
CLN3-216ENST00000565316 FRMD6Q96NE9 622 aa16.06■□□□□ 0.16
CLN3-216ENST00000565316 CDCP1Q9H5V8 836 aa16.06■□□□□ 0.16
CLN3-216ENST00000565316 TRIM45Q9H8W5 580 aaPredicted RBP16.06■□□□□ 0.16
CLN3-216ENST00000565316 KLHL1Q9NR64 748 aa16.06■□□□□ 0.16
CLN3-216ENST00000565316 TEX264Q9Y6I9 313 aa16.06■□□□□ 0.16
CLN3-216ENST00000565316 IGKV3D-11A0A0A0MRZ8 115 aa16.05■□□□□ 0.16
CLN3-216ENST00000565316 NDC80O14777 642 aa16.05■□□□□ 0.16
CLN3-216ENST00000565316 PRMT3O60678 531 aa16.05■□□□□ 0.16
CLN3-216ENST00000565316 B4GALT2O60909 372 aa16.05■□□□□ 0.16
CLN3-216ENST00000565316 GUCA1CO95843 209 aa16.05■□□□□ 0.16
CLN3-216ENST00000565316 SERPIND1P05546 499 aa16.05■□□□□ 0.16
CLN3-216ENST00000565316 SP1P08047 785 aa16.05■□□□□ 0.16
CLN3-216ENST00000565316 AGAP20933 346 aa16.05■□□□□ 0.16
CLN3-216ENST00000565316 HTR1EP28566 365 aa16.05■□□□□ 0.16
CLN3-216ENST00000565316 ST13P50502 369 aaKnown RBP16.05■□□□□ 0.16
CLN3-216ENST00000565316 CASP6P55212 293 aa16.05■□□□□ 0.16
CLN3-216ENST00000565316 ADORA2A-AS1P86434 159 aa16.05■□□□□ 0.16
CLN3-216ENST00000565316 ALDH6A1Q02252 535 aaKnown RBP16.05■□□□□ 0.16
CLN3-216ENST00000565316 ZNF468Q5VIY5 522 aaPredicted RBP16.05■□□□□ 0.16
CLN3-216ENST00000565316 SLC25A25Q6KCM7 469 aa16.05■□□□□ 0.16
CLN3-216ENST00000565316 XKRXQ6PP77 449 aa16.05■□□□□ 0.16
CLN3-216ENST00000565316 NXPE4Q6UWF7 544 aa16.05■□□□□ 0.16
CLN3-216ENST00000565316 SYDE1Q6ZW31 735 aaPredicted RBP16.05■□□□□ 0.16
CLN3-216ENST00000565316 THOC6Q86W42 341 aaKnown RBP16.05■□□□□ 0.16
CLN3-216ENST00000565316 ARMC10Q8N2F6 343 aa16.05■□□□□ 0.16
CLN3-216ENST00000565316 KIF2BQ8N4N8 673 aa16.05■□□□□ 0.16
CLN3-216ENST00000565316 NFAM1Q8NET5 270 aaPredicted RBP16.05■□□□□ 0.16
CLN3-216ENST00000565316 TRPV3Q8NET8 790 aa16.05■□□□□ 0.16
CLN3-216ENST00000565316 ADAMTS18Q8TE60 1221 aa16.05■□□□□ 0.16
CLN3-216ENST00000565316 CFAP36Q96G28 342 aa16.05■□□□□ 0.16
CLN3-216ENST00000565316 TSNARE1Q96NA8 513 aa16.05■□□□□ 0.16
CLN3-216ENST00000565316 PTCHD1Q96NR3 888 aa16.05■□□□□ 0.16
CLN3-216ENST00000565316 CHST11Q9NPF2 352 aa16.05■□□□□ 0.16
CLN3-216ENST00000565316 TCRBV16S1A1N1A0A5B0 115 aa16.04■□□□□ 0.16
CLN3-216ENST00000565316 FAM227AF5H4B4 570 aa16.04■□□□□ 0.16
CLN3-216ENST00000565316 SERPINA6P08185 405 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms