RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 E7ENX8 843 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 ARHGEF9O43307 516 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 KIF5CO60282 957 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 NIPSNAP2O75323 286 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 ITGA10O75578 1167 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 TJP3O95049 919 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 SLC16A8O95907 504 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 MBD3O95983 291 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 FHP07954 510 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 TPM1P09493 284 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 CHRM3P20309 590 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 RPS3P23396 243 aaKnown RBP eCLIP6.83□□□□□ -1.32
VPS4A-203ENST00000564399 JAK1P23458 1154 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 FMO4P31512 558 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 ADH7P40394 386 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 DCAF7P61962 342 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 TAP2Q03519 686 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 ACVR1Q04771 509 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 HYAL2Q12891 473 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 PDAP1Q13442 181 aaKnown RBP6.83□□□□□ -1.32
VPS4A-203ENST00000564399 PCBP2Q15366 365 aaKnown RBP eCLIP6.83□□□□□ -1.32
VPS4A-203ENST00000564399 KLHL38Q2WGJ6 581 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 SHEQ5VZ18 495 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 TMEM214Q6NUQ4 689 aaKnown RBP6.83□□□□□ -1.32
VPS4A-203ENST00000564399 CLEC17AQ6ZS10 378 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 LUZP1Q86V48 1076 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 SLC22A16Q86VW1 577 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 SLC26A11Q86WA9 606 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 LRRC6Q86X45 466 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 PDSS2Q86YH6 399 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 OR5T3Q8NGG3 340 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 ZNF480Q8WV37 535 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 SLC13A3Q8WWT9 602 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 SLCO2A1Q92959 643 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 TBC1D20Q96BZ9 403 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 THAP11Q96EK4 314 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 CCDC138Q96M89 665 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 GBP4Q96PP9 640 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 PANX2Q96RD6 677 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 P2RY12Q9H244 342 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 EXO5Q9H790 373 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 TMEM184CQ9NVA4 438 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 KCMF1Q9P0J7 381 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 B4GALT7Q9UBV7 327 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 CBLCQ9ULV8 474 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 TCAF1Q9Y4C2 921 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 DSCAMO60469 2012 aa6.83□□□□□ -1.32
VPS4A-203ENST00000564399 KCNE1BA0A087WTH5 132 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 TRBV11-1A0A0K0K1C0 115 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 FEZF1A0PJY2 475 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 PINLYPA6NC86 204 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 SAGE2PA6NJ88 616 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 ERI2A8K979 691 aaKnown RBP6.82□□□□□ -1.32
VPS4A-203ENST00000564399 A8MVJ9 347 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 E7EVH7 732 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 G3V3Y1 287 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 GOLGA6L19H0YKK7 550 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 SYT5O00445 386 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 SMAD7O15105 426 aaKnown RBP6.82□□□□□ -1.32
VPS4A-203ENST00000564399 CHST10O43529 356 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 WDR1O75083 606 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 PSIP1O75475 530 aaKnown RBP6.82□□□□□ -1.32
VPS4A-203ENST00000564399 TPM3P06753 285 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 SLC35G6P0C7Q6 338 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 HRH2P25021 359 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 TACR1P25103 407 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 ATP5DP30049 168 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 COILP38432 576 aaPredicted RBP6.82□□□□□ -1.32
VPS4A-203ENST00000564399 GRIA1P42261 906 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 MAGEA1P43355 309 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 MAN2A2P49641 1150 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 SSR4P51571 173 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 CLCN2P51788 898 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 HADHBP55084 474 aaKnown RBP6.82□□□□□ -1.32
VPS4A-203ENST00000564399 GDF10P55107 478 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 RWDD2BP57060 319 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 SKP1P63208 163 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 OLR1P78380 273 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 BTG2P78543 158 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 MEF2AQ02078 507 aaPredicted RBP6.82□□□□□ -1.32
VPS4A-203ENST00000564399 TRIM14Q14142 442 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 HERC3Q15034 1050 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 DAZAP2Q15038 168 aaPredicted RBP6.82□□□□□ -1.32
VPS4A-203ENST00000564399 ACSBG2Q5FVE4 666 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 CTSL3PQ5NE16 218 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 C1orf185Q5T7R7 199 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 WLSQ5T9L3 541 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 RTL6Q6ICC9 239 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 CAPN13Q6MZZ7 669 aaPredicted RBP6.82□□□□□ -1.32
VPS4A-203ENST00000564399 C11orf63Q6NUN7 778 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 AADACL2Q6P093 401 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 RGS9BPQ6ZS82 235 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 ASPGQ86U10 573 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 P3H2Q8IVL5 708 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 MPP5Q8N3R9 675 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 FBXO15Q8NCQ5 510 aaPredicted RBP6.82□□□□□ -1.32
VPS4A-203ENST00000564399 PSD4Q8NDX1 1056 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 ARMC2Q8NEN0 867 aa6.82□□□□□ -1.32
VPS4A-203ENST00000564399 PPHLN1Q8NEY8 458 aaKnown RBP6.82□□□□□ -1.32
VPS4A-203ENST00000564399 OR2M7Q8NG81 312 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms