RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 KIAA1841Q6NSI8 718 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 ZNF783Q6ZMS7 281 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 NPAS3Q8IXF0 933 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 C11orf65Q8NCR3 313 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 OR5AK3PQ8NH89 298 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 C2orf15Q8WU43 125 aaKnown RBP12.7□□□□□ -0.38
CLN3-210ENST00000563874 SCAMP4Q969E2 229 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 COL21A1Q96P44 957 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 TSEN34Q9BSV6 310 aaKnown RBP12.7□□□□□ -0.38
CLN3-210ENST00000563874 GPATCH2Q9NW75 528 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 WDR70Q9NW82 654 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 PCDHGA3Q9Y5H0 932 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 AGAP14A8MT82 685 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 A8MV72 311 aaPredicted RBP12.7□□□□□ -0.38
CLN3-210ENST00000563874 AP3D1O14617 1153 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 CYP2A7P20853 494 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 PRKCDQ05655 676 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 NAE1Q13564 534 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 LMNTD1Q8N9Z9 388 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 ADAMTS19Q8TE59 1207 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 TPK1Q9H3S4 243 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 SGK2Q9HBY8 427 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 PLCXD1Q9NUJ7 323 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 RUVBL1Q9Y265 456 aaKnown RBP12.7□□□□□ -0.38
CLN3-210ENST00000563874 CFAP20Q9Y6A4 193 aaKnown RBP12.7□□□□□ -0.38
CLN3-210ENST00000563874 FRMPD3Q5JV73 1810 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 MGAT4DA6NG13 374 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 FAM227AF5H4B4 570 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 ADAMDEC1O15204 470 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 RGS5O15539 181 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 IGSF6O95976 241 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 RAE1P78406 368 aaKnown RBP12.7□□□□□ -0.38
CLN3-210ENST00000563874 LMAN2Q12907 356 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 CSTF3Q12996 717 aaKnown RBP12.7□□□□□ -0.38
CLN3-210ENST00000563874 TSTA3Q13630 321 aaPredicted RBP12.7□□□□□ -0.38
CLN3-210ENST00000563874 SLC8B1Q6J4K2 584 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 FAM180BQ6P0A1 224 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 THOC6Q86W42 341 aaKnown RBP12.7□□□□□ -0.38
CLN3-210ENST00000563874 GATAD2AQ86YP4 633 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 BBS7Q8IWZ6 715 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 OR8H2Q8N162 312 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 CBARPQ8N350 705 aaPredicted RBP12.7□□□□□ -0.38
CLN3-210ENST00000563874 PCSK9Q8NBP7 692 aaKnown RBP12.7□□□□□ -0.38
CLN3-210ENST00000563874 NFKBIDQ8NI38 313 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 WDR20Q8TBZ3 569 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 SAMD11Q96NU1 681 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 CEP44Q9C0F1 390 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 NXF2Q9GZY0 626 aaKnown RBP12.7□□□□□ -0.38
CLN3-210ENST00000563874 EXOSC4Q9NPD3 245 aaKnown RBP12.7□□□□□ -0.38
CLN3-210ENST00000563874 FKBP14Q9NWM8 211 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 FBXL12Q9NXK8 326 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 MANSC4A6NHS7 340 aaPredicted RBP12.69□□□□□ -0.38
CLN3-210ENST00000563874 LOC110117498-PIK3R3F6TDL0 507 aa12.69□□□□□ -0.38
CLN3-210ENST00000563874 H3BM21 787 aa12.69□□□□□ -0.38
CLN3-210ENST00000563874 SAP18O00422 153 aaKnown RBP12.69□□□□□ -0.38
CLN3-210ENST00000563874 CAP1Q01518 475 aa12.69□□□□□ -0.38
CLN3-210ENST00000563874 ELAVL2Q12926 359 aaKnown RBP12.69□□□□□ -0.38
CLN3-210ENST00000563874 ZNF385BQ569K4 471 aa12.69□□□□□ -0.38
CLN3-210ENST00000563874 NXNL2Q5VZ03 156 aa12.69□□□□□ -0.38
CLN3-210ENST00000563874 TPRG1Q6ZUI0 275 aa12.69□□□□□ -0.38
CLN3-210ENST00000563874 LILRA3Q8N6C8 439 aaPredicted RBP12.69□□□□□ -0.38
CLN3-210ENST00000563874 VPS37AQ8NEZ2 397 aa12.69□□□□□ -0.38
CLN3-210ENST00000563874 OR2AP1Q8NGE2 309 aa12.69□□□□□ -0.38
CLN3-210ENST00000563874 CEP19Q96LK0 163 aa12.69□□□□□ -0.38
CLN3-210ENST00000563874 BRD9Q9H8M2 597 aa12.69□□□□□ -0.38
CLN3-210ENST00000563874 TRIM39Q9HCM9 518 aa12.69□□□□□ -0.38
CLN3-210ENST00000563874 TET1Q8NFU7 2136 aa12.69□□□□□ -0.38
CLN3-210ENST00000563874 FAM47E-STBD1D6RA91 191 aa12.69□□□□□ -0.38
CLN3-210ENST00000563874 SOCS5O75159 536 aa12.69□□□□□ -0.38
CLN3-210ENST00000563874 GABRB1P18505 474 aa12.69□□□□□ -0.38
CLN3-210ENST00000563874 PIK3CBP42338 1070 aa12.69□□□□□ -0.38
CLN3-210ENST00000563874 HBA1P69905 142 aa12.69□□□□□ -0.38
CLN3-210ENST00000563874 MICAQ29983 383 aa12.69□□□□□ -0.38
CLN3-210ENST00000563874 CDKL4Q5MAI5 379 aa12.69□□□□□ -0.38
CLN3-210ENST00000563874 FAM217AQ8IXS0 508 aa12.69□□□□□ -0.38
CLN3-210ENST00000563874 SCRN2Q96FV2 425 aa12.69□□□□□ -0.38
CLN3-210ENST00000563874 SDHCQ99643 169 aaPredicted RBP12.69□□□□□ -0.38
CLN3-210ENST00000563874 MGLLQ99685 303 aa12.69□□□□□ -0.38
CLN3-210ENST00000563874 ZDHHC6Q9H6R6 413 aa12.69□□□□□ -0.38
CLN3-210ENST00000563874 CCDC59Q9P031 241 aaKnown RBP12.69□□□□□ -0.38
CLN3-210ENST00000563874 MAP4K5Q9Y4K4 846 aa12.69□□□□□ -0.38
CLN3-210ENST00000563874 YIPF1Q9Y548 306 aa12.69□□□□□ -0.38
CLN3-210ENST00000563874 PEX16Q9Y5Y5 336 aa12.69□□□□□ -0.38
CLN3-210ENST00000563874 GFYI3L273 518 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 ZW10O43264 779 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 PRMT3O60678 531 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 SLC10A3P09131 477 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 ATP1B2P14415 290 aaPredicted RBP12.68□□□□□ -0.38
CLN3-210ENST00000563874 IDSP22304 550 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 AZGP1P25311 298 aaKnown RBP12.68□□□□□ -0.38
CLN3-210ENST00000563874 PCGF2P35227 344 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 MC1RQ01726 317 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 PTGES3Q15185 160 aaKnown RBP12.68□□□□□ -0.38
CLN3-210ENST00000563874 BCL7AQ4VC05 210 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.68□□□□□ -0.38
CLN3-210ENST00000563874 TMEM150AQ86TG1 271 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 IL17RDQ8NFM7 739 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 VANGL1Q8TAA9 524 aaPredicted RBP12.68□□□□□ -0.38
CLN3-210ENST00000563874 OVCA2Q8WZ82 227 aa12.68□□□□□ -0.38
CLN3-210ENST00000563874 CIDECQ96AQ7 238 aaPredicted RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms