RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 RAB43Q86YS6 212 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 CYP4X1Q8N118 509 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 KRT78Q8N1N4 520 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 TMEM151AQ8N4L1 468 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 TRPV3Q8NET8 790 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 TTLQ8NG68 377 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 STT3BQ8TCJ2 826 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 CREB3L4Q8TEY5 395 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 APOBEC4Q8WW27 367 aaKnown RBP8.88□□□□□ -0.99
LDLR-211ENST00000560173 PTCD3Q96EY7 689 aaKnown RBP8.88□□□□□ -0.99
LDLR-211ENST00000560173 MMABQ96EY8 250 aaPredicted RBP8.88□□□□□ -0.99
LDLR-211ENST00000560173 SEC16BQ96JE7 1060 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 SLC6A16Q9GZN6 736 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 AICDAQ9GZX7 198 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 CLMPQ9H6B4 373 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 ANKHQ9HCJ1 492 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 TRPC4Q9UBN4 977 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 ZNF282Q9UDV7 671 aaPredicted RBP8.88□□□□□ -0.99
LDLR-211ENST00000560173 TMCO1Q9UM00 188 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 MAN2B2Q9Y2E5 1009 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 MAP4K5Q9Y4K4 846 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 TNPO3Q9Y5L0 923 aaKnown RBP8.88□□□□□ -0.99
LDLR-211ENST00000560173 KCNMB2Q9Y691 235 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 PCSK5Q92824 1860 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 BSNQ9UPA5 3926 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 A0A1W2PPM1 405 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 FOXO6A8MYZ6 492 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 C4orf51C9J302 202 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 STX16-NPEPL1H3BU86 382 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 GOLGA8RI6L899 631 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 SGK494L7N484 410 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 E2F3O00716 465 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 STX16O14662 325 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 FFAR3O14843 346 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 GPR42O15529 346 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 SMIM24O75264 130 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 CDH16O75309 829 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 WFS1O76024 890 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 KLHL18O94889 574 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 SIX3O95343 332 aaPredicted RBP8.87□□□□□ -0.99
LDLR-211ENST00000560173 TBX6O95947 436 aaPredicted RBP8.87□□□□□ -0.99
LDLR-211ENST00000560173 SERPINA6P08185 405 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 ZGLP1P0C6A0 271 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 ZNF888P0CJ79 500 aaPredicted RBP8.87□□□□□ -0.99
LDLR-211ENST00000560173 EPB42P16452 691 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 ALOX12P18054 663 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 NR1D1P20393 614 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 EEF1DP29692 281 aaKnown RBP8.87□□□□□ -0.99
LDLR-211ENST00000560173 OTX2P32243 289 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 PIK3CGP48736 1102 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 POLE2P56282 527 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 MAT1AQ00266 395 aaKnown RBP8.87□□□□□ -0.99
LDLR-211ENST00000560173 OCA2Q04671 838 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 LAPTM5Q13571 262 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 SSPNQ14714 243 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 HERC3Q15034 1050 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 TERF2Q15554 542 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 SYT16Q17RD7 645 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 PAGE2BQ5JRK9 111 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 CPZQ66K79 652 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 ADNP2Q6IQ32 1131 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 SHISA6Q6ZSJ9 500 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 SH2D5Q6ZV89 423 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 GOLGA7Q7Z5G4 137 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 APLFQ8IW19 511 aaPredicted RBP8.87□□□□□ -0.99
LDLR-211ENST00000560173 ZC3H7AQ8IWR0 971 aaKnown RBP8.87□□□□□ -0.99
LDLR-211ENST00000560173 TEX9Q8N6V9 391 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 EXD3Q8N9H8 876 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 OR2W6PQ8NHA6 318 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 UTP15Q8TED0 518 aaKnown RBP8.87□□□□□ -0.99
LDLR-211ENST00000560173 MIEF2Q96C03 454 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 PHF21BQ96EK2 531 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 IP6K3Q96PC2 410 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 ARHGAP9Q9BRR9 750 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 CRB3Q9BUF7 120 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 TGIF2Q9GZN2 237 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 RHBGQ9H310 441 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 CENPHQ9H3R5 247 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 KLHL31Q9H511 634 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 SOX17Q9H6I2 414 aaPredicted RBP8.87□□□□□ -0.99
LDLR-211ENST00000560173 MKKSQ9NPJ1 570 aaPredicted RBP8.87□□□□□ -0.99
LDLR-211ENST00000560173 C14orf105Q9NVL8 296 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 TMEM216Q9P0N5 145 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 SENP1Q9P0U3 644 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 HCN3Q9P1Z3 774 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 PCTPQ9UKL6 214 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 ZNF490Q9ULM2 529 aaPredicted RBP8.87□□□□□ -0.99
LDLR-211ENST00000560173 NAALAD2Q9Y3Q0 740 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 MED13Q9UHV7 2174 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 CCDC88CQ9P219 2028 aa8.87□□□□□ -0.99
LDLR-211ENST00000560173 COL12A1Q99715 3063 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 ZNF860A6NHJ4 632 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 ARGFXA6NJG6 315 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 A8MT66 165 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 PYCARD-AS1I3L0S3 204 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 GALR3O60755 368 aaPredicted RBP8.86□□□□□ -0.99
LDLR-211ENST00000560173 RDH16O75452 317 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 CLEC3AO75596 197 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 B3GALT4O96024 378 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 GSTA1P08263 222 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 105.3 ms