RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 GALK2Q01415 458 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 BCL2L1Q07817 233 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 MRPL28Q13084 256 aaKnown RBP10.92□□□□□ -0.66
LDLR-208ENST00000558518 NAE1Q13564 534 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 PTGES3Q15185 160 aaKnown RBP10.92□□□□□ -0.66
LDLR-208ENST00000558518 NFE2Q16621 373 aaPredicted RBP10.92□□□□□ -0.66
LDLR-208ENST00000558518 ZNF284Q2VY69 593 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 IQCCQ4KMZ1 466 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 SERPINA13PQ6UXR4 307 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 USP30Q70CQ3 517 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 OLIG3Q7RTU3 272 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 NOXA1Q86UR1 476 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 TCEANCQ8N8B7 351 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 VPS37AQ8NEZ2 397 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 MYLIPQ8WY64 445 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 ST6GAL2Q96JF0 529 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 TRIB3Q96RU7 358 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 HDHD2Q9H0R4 259 aa10.92□□□□□ -0.66
LDLR-208ENST00000558518 SPIN1Q9Y657 262 aaPredicted RBP10.92□□□□□ -0.66
LDLR-208ENST00000558518 FAM240BA0A1B0GVZ2 78 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 PLD2O14939 933 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 ENTPD6O75354 484 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 SEMA3DO95025 777 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 GADD45GO95257 159 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 CYP17A1P05093 508 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 YES1P07947 543 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 XPAP23025 273 aaPredicted RBP10.91□□□□□ -0.66
LDLR-208ENST00000558518 GGT2P36268 569 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 IL18Q14116 193 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 UGT8Q16880 541 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 TTLL9Q3SXZ7 439 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 WDR45BQ5MNZ6 344 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 FRG2Q64ET8 278 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 GALNT7Q86SF2 657 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 LACC1Q8IV20 430 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 KLHDC8BQ8IXV7 354 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 ZNF557Q8N988 423 aaPredicted RBP10.91□□□□□ -0.66
LDLR-208ENST00000558518 FCGR1BQ92637 280 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 MYO19Q96H55 970 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 C8orf48Q96LL4 319 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 FRG2BQ96QU4 278 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 C11orf54Q9H0W9 315 aaPredicted RBP10.91□□□□□ -0.66
LDLR-208ENST00000558518 IL26Q9NPH9 171 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 CCL27Q9Y4X3 112 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 PCDHGB1Q9Y5G3 927 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 MAU2Q9Y6X3 613 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 A0A0G2JMZ2 1700 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 LRRC37A2A6NM11 1700 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 FAM25AB3EWG3 89 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 FAM25CB3EWG5 89 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 FAM25GB3EWG6 89 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 SMAD6O43541 496 aaKnown RBP10.91□□□□□ -0.66
LDLR-208ENST00000558518 LZTS3O60299 673 aaPredicted RBP10.91□□□□□ -0.66
LDLR-208ENST00000558518 NCR1O76036 304 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 EBLN1P0CF75 366 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 TIE1P35590 1138 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 ATP13A5Q4VNC0 1218 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 PTOV1Q86YD1 416 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 VRK3Q8IV63 474 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 SLC38A6Q8IZM9 456 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 YIPF7Q8N8F6 280 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 BRI3BPQ8WY22 251 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 OR2A14Q96R47 310 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 MGME1Q9BQP7 344 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 WACQ9BTA9 647 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 TRIM45Q9H8W5 580 aaPredicted RBP10.91□□□□□ -0.66
LDLR-208ENST00000558518 TBC1D17Q9HA65 648 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 ZNF226Q9NYT6 803 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 SNX7Q9UNH6 387 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 CYP2A7P20853 494 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 APEX1P27695 318 aaKnown RBP10.91□□□□□ -0.66
LDLR-208ENST00000558518 HTR7P34969 479 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 ATP6V1E1P36543 226 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 NFATC2Q13469 925 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 GAB1Q13480 694 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 TBCEQ15813 527 aaPredicted RBP10.91□□□□□ -0.66
LDLR-208ENST00000558518 RPS26P11Q5JNZ5 115 aaPredicted RBP10.91□□□□□ -0.66
LDLR-208ENST00000558518 DPY19L3Q6ZPD9 716 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 C11orf65Q8NCR3 313 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 ATP6V1C2Q8NEY4 427 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 CHAC2Q8WUX2 184 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 WBP2Q969T9 261 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 ZNF566Q969W8 418 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 CIDECQ96AQ7 238 aaPredicted RBP10.91□□□□□ -0.66
LDLR-208ENST00000558518 HRASLS5Q96KN8 279 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 TM9SF2Q99805 663 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 SLC32A1Q9H598 525 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 SGK2Q9HBY8 427 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 IL17CQ9P0M4 197 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 MBD1Q9UIS9 605 aaPredicted RBP10.91□□□□□ -0.66
LDLR-208ENST00000558518 SSR3Q9UNL2 185 aa10.91□□□□□ -0.66
LDLR-208ENST00000558518 LOC102723532A0A0G2JNH3 316 aa10.9□□□□□ -0.66
LDLR-208ENST00000558518 KLK8O60259 260 aa10.9□□□□□ -0.66
LDLR-208ENST00000558518 C6orf47O95873 294 aa10.9□□□□□ -0.66
LDLR-208ENST00000558518 TGFB1P01137 390 aa10.9□□□□□ -0.66
LDLR-208ENST00000558518 ADRA2AP08913 450 aa10.9□□□□□ -0.66
LDLR-208ENST00000558518 MAPK1P28482 360 aa10.9□□□□□ -0.66
LDLR-208ENST00000558518 RORCP51449 518 aa10.9□□□□□ -0.66
LDLR-208ENST00000558518 CXCR4P61073 352 aa10.9□□□□□ -0.66
LDLR-208ENST00000558518 PRKCDQ05655 676 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms