RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 CAPNS2Q96L46 248 aa12.38□□□□□ -0.43
LDLR-207ENST00000558013 SIGLEC11Q96RL6 698 aa12.38□□□□□ -0.43
LDLR-207ENST00000558013 TCF25Q9BQ70 676 aa12.38□□□□□ -0.43
LDLR-207ENST00000558013 DOHHQ9BU89 302 aa12.38□□□□□ -0.43
LDLR-207ENST00000558013 NECTIN3Q9NQS3 549 aa12.38□□□□□ -0.43
LDLR-207ENST00000558013 WNT6Q9Y6F9 365 aa12.38□□□□□ -0.43
LDLR-207ENST00000558013 LOC100506127A0A0U1RQW1 187 aa12.38□□□□□ -0.43
LDLR-207ENST00000558013 H0YIV9 168 aa12.38□□□□□ -0.43
LDLR-207ENST00000558013 EIF3FO00303 357 aaPredicted RBP12.38□□□□□ -0.43
LDLR-207ENST00000558013 PCDH17O14917 1159 aa12.38□□□□□ -0.43
LDLR-207ENST00000558013 ITGB8P26012 769 aa12.38□□□□□ -0.43
LDLR-207ENST00000558013 CXCR4P61073 352 aa12.38□□□□□ -0.43
LDLR-207ENST00000558013 RPS26P62854 115 aaKnown RBP12.38□□□□□ -0.43
LDLR-207ENST00000558013 TMEM115Q12893 351 aaPredicted RBP12.38□□□□□ -0.43
LDLR-207ENST00000558013 TP53BP2Q13625 1128 aa12.38□□□□□ -0.43
LDLR-207ENST00000558013 VEZF1Q14119 521 aa12.38□□□□□ -0.43
LDLR-207ENST00000558013 DGUOKQ16854 277 aa12.38□□□□□ -0.43
LDLR-207ENST00000558013 EXOC3L2Q2M3D2 409 aa12.38□□□□□ -0.43
LDLR-207ENST00000558013 ERICH5Q6P6B1 374 aa12.38□□□□□ -0.43
LDLR-207ENST00000558013 P3H2Q8IVL5 708 aa12.38□□□□□ -0.43
LDLR-207ENST00000558013 GTPBP3Q969Y2 492 aaKnown RBP12.38□□□□□ -0.43
LDLR-207ENST00000558013 ZNF689Q96CS4 500 aaPredicted RBP12.38□□□□□ -0.43
LDLR-207ENST00000558013 PRKAB1Q9Y478 270 aa12.38□□□□□ -0.43
LDLR-207ENST00000558013 ANTXRLA6NF34 631 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 SLC16A5O15375 505 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 LILRB3O75022 631 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 KLHL18O94889 574 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 DNTTP04053 509 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 ACRP10323 421 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 DBTP11182 482 aaKnown RBP12.37□□□□□ -0.43
LDLR-207ENST00000558013 SEPHS1P49903 392 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 NTHL1P78549 312 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 SLC5A12Q1EHB4 618 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 GRHL2Q6ISB3 625 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 SLCO4C1Q6ZQN7 724 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 COMMD6Q7Z4G1 85 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 PLD3Q8IV08 490 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 RASGRP3Q8IV61 690 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 GGHQ92820 318 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 SLC35A5Q9BS91 424 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 ACAT2Q9BWD1 397 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 ROGDIQ9GZN7 287 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 DCSTAMPQ9H295 470 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 ADPRHL2Q9NX46 363 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 MYO1DO94832 1006 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 HSMCR30P0CW71 290 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 VIPR1P32241 457 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 RECQLP46063 649 aaPredicted RBP12.37□□□□□ -0.43
LDLR-207ENST00000558013 TBPL1P62380 186 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 SELENOWP63302 87 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 SPIBQ01892 262 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 TEAD2Q15562 447 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 TTC23LQ6PF05 361 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 KLHL17Q6TDP4 642 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 MSANTD1Q6ZTZ1 278 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 RNF130Q86XS8 419 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 CFAP206Q8IYR0 622 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 KLHL23Q8NBE8 558 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 C11orf65Q8NCR3 313 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 BTN2A2Q8WVV5 523 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 IL17FQ96PD4 163 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 PITX2Q99697 317 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 ITM2CQ9NQX7 267 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 QPCTLQ9NXS2 382 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 PLAGL1Q9UM63 463 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 PCDHGB3Q9Y5G1 929 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 PRAMEF33A0A0G2JMD5 474 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 KPNA4O00629 521 aaPredicted RBP12.37□□□□□ -0.43
LDLR-207ENST00000558013 PRAMEF10O60809 474 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 DNAJB5O75953 348 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 NPPBP16860 134 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 CLK1P49759 484 aaKnown RBP12.37□□□□□ -0.43
LDLR-207ENST00000558013 POLR2LP62875 67 aaKnown RBP12.37□□□□□ -0.43
LDLR-207ENST00000558013 UAP1L1Q3KQV9 507 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 COLEC12Q5KU26 742 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 SLC22A16Q86VW1 577 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 OR10G2Q8NGC3 310 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 ZSWIM3Q96MP5 696 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 RSPO3Q9BXY4 272 aaPredicted RBP12.37□□□□□ -0.43
LDLR-207ENST00000558013 C6orf62Q9GZU0 229 aaPredicted RBP12.37□□□□□ -0.43
LDLR-207ENST00000558013 OR51E2Q9H255 320 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 DSN1Q9H410 356 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 ABCB10Q9NRK6 738 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 ZNF226Q9NYT6 803 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 ERVW-1Q9UQF0 538 aa12.37□□□□□ -0.43
LDLR-207ENST00000558013 CAB39Q9Y376 341 aaPredicted RBP12.37□□□□□ -0.43
LDLR-207ENST00000558013 HELZP42694 1942 aaKnown RBP12.36□□□□□ -0.43
LDLR-207ENST00000558013 SLC5A10A0PJK1 596 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 AIREO43918 545 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 PTHP01270 115 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 KLK1P06870 262 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 TGM1P22735 817 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 TIA1P31483 386 aaKnown RBP eCLIP12.36□□□□□ -0.431e-7■□□□□ 9.9
LDLR-207ENST00000558013 SLBPQ14493 270 aaKnown RBP eCLIP12.36□□□□□ -0.43
LDLR-207ENST00000558013 METTL3Q86U44 580 aaKnown RBP12.36□□□□□ -0.43
LDLR-207ENST00000558013 MCFD2Q8NI22 146 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 IRF7Q92985 503 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 GLYATL1Q969I3 302 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 AP2M1Q96CW1 435 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 COQ8BQ96D53 544 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms