RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 Q5BKY6 102 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 C10orf62Q5T681 223 aaPredicted RBP11.88□□□□□ -0.51
LDLR-205ENST00000557933 OTOP2Q7RTS6 562 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 GPR65Q8IYL9 337 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 STK40Q8N2I9 435 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 CADM2Q8N3J6 435 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 NFKBIDQ8NI38 313 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 PIH1D2Q8WWB5 315 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 DEPDC7Q96QD5 511 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 MGLLQ99685 303 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 MAGIXQ9H6Y5 334 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 NDUFAF4Q9P032 175 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 RAB23Q9ULC3 237 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 LYVE1Q9Y5Y7 322 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 GBF1Q92538 1859 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 ARHGAP33O14559 1287 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 GJA1P17302 382 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 AMD1P17707 334 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 S100A1P23297 94 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 ACRV1P26436 265 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 RPS19P39019 145 aaKnown RBP11.87□□□□□ -0.51
LDLR-205ENST00000557933 MRPL19P49406 292 aaKnown RBP11.87□□□□□ -0.51
LDLR-205ENST00000557933 IL18R1Q13478 541 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 ZFP69Q49AA0 526 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 RPS26P11Q5JNZ5 115 aaPredicted RBP11.87□□□□□ -0.51
LDLR-205ENST00000557933 FRG2Q64ET8 278 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 LHX8Q68G74 356 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 TMCO2Q7Z6W1 182 aaPredicted RBP11.87□□□□□ -0.51
LDLR-205ENST00000557933 SLC34A3Q8N130 599 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 CAMKK1Q8N5S9 505 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 TET1Q8NFU7 2136 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 FRG2BQ96QU4 278 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 SORBS1Q9BX66 1292 aaKnown RBP11.87□□□□□ -0.51
LDLR-205ENST00000557933 SMG9Q9H0W8 520 aaKnown RBP11.87□□□□□ -0.51
LDLR-205ENST00000557933 SLC32A1Q9H598 525 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 WBP1LQ9NX94 342 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 WBP11Q9Y2W2 641 aaKnown RBP11.87□□□□□ -0.51
LDLR-205ENST00000557933 TRAV19A0A0A6YYK7 116 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 CLDN24A6NM45 220 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 CLDN11O75508 207 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 APOA1P02647 267 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 CDK1P06493 297 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 UGT2B15P54855 530 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 ACSM2AQ08AH3 577 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 CCDC85BQ15834 202 aaPredicted RBP11.87□□□□□ -0.51
LDLR-205ENST00000557933 ZC3H12BQ5HYM0 836 aaKnown RBP11.87□□□□□ -0.51
LDLR-205ENST00000557933 AGAP6Q5VW22 663 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 ACSM2BQ68CK6 577 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 ALG1LQ6GMV1 187 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 SZRD1Q7Z422 152 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 SIX5Q8N196 739 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 IQCF1Q8N6M8 205 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 ZFP41Q8N8Y5 198 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.87□□□□□ -0.51
LDLR-205ENST00000557933 OR6F1Q8NGZ6 308 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 BCL7CQ8WUZ0 217 aaPredicted RBP11.87□□□□□ -0.51
LDLR-205ENST00000557933 AUTS2Q8WXX7 1259 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 TP53INP1Q96A56 240 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 COQ8BQ96D53 544 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 AGAP4Q96P64 663 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 BARHL1Q9BZE3 327 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 TRPV5Q9NQA5 729 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 ABCB8Q9NUT2 735 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 FNIP2Q9P278 1114 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 C5AR2Q9P296 337 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 A0A1B0GVM2 712 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 TMEM229AB2RXF0 380 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 SMAD3P84022 425 aaKnown RBP11.87□□□□□ -0.51
LDLR-205ENST00000557933 NAE1Q13564 534 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 NFE2L1Q14494 772 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 ZNF385BQ569K4 471 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 LIPKQ5VXJ0 399 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 CBLL1Q75N03 491 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 EIF3MQ7L2H7 374 aaKnown RBP11.87□□□□□ -0.51
LDLR-205ENST00000557933 SHFQ7M4L6 423 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 GALNT12Q8IXK2 581 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 SYT14Q8NB59 555 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 LILRB4Q8NHJ6 448 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 HRASLS5Q96KN8 279 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 VPS35Q96QK1 796 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 FAM129BQ96TA1 746 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 DUSP26Q9BV47 211 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 HMX1Q9NP08 348 aaPredicted RBP11.87□□□□□ -0.51
LDLR-205ENST00000557933 TMEM39AQ9NV64 488 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 TAS2R9Q9NYW1 312 aa11.87□□□□□ -0.51
LDLR-205ENST00000557933 A0A1W2PQ09 198 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 SLC35F4A4IF30 521 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 NOTOA8MTQ0 251 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 SCN2BO60939 215 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 INHAP05111 366 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 ANXA4P09525 319 aaPredicted RBP11.86□□□□□ -0.51
LDLR-205ENST00000557933 HIST1H2AGP0C0S8 130 aaPredicted RBP11.86□□□□□ -0.51
LDLR-205ENST00000557933 HIST1H2ADP20671 130 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 AOAHP28039 575 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 CNR2P34972 360 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 HTR3AP46098 478 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 ITGA1P56199 1179 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 PTGES3Q15185 160 aaKnown RBP11.86□□□□□ -0.51
LDLR-205ENST00000557933 SSX1Q16384 188 aa11.86□□□□□ -0.51
LDLR-205ENST00000557933 ZNF181Q2M3W8 571 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms