RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 ZGRF1Q86YA3 2104 aa13.76□□□□□ -0.21
SHMT2-235ENST00000557740 ITPR2Q14571 2701 aa13.76□□□□□ -0.21
SHMT2-235ENST00000557740 FAM95CA0A1B0GW59 222 aa13.76□□□□□ -0.21
SHMT2-235ENST00000557740 PSMD12O00232 456 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-235ENST00000557740 SEC31AO94979 1220 aaKnown RBP13.76□□□□□ -0.21
SHMT2-235ENST00000557740 MST1P26927 711 aa13.76□□□□□ -0.21
SHMT2-235ENST00000557740 CASP6P55212 293 aa13.76□□□□□ -0.21
SHMT2-235ENST00000557740 GNG11P61952 73 aa13.76□□□□□ -0.21
SHMT2-235ENST00000557740 PDIA2Q13087 525 aaKnown RBP13.76□□□□□ -0.21
SHMT2-235ENST00000557740 OR1C1Q15619 314 aa13.76□□□□□ -0.21
SHMT2-235ENST00000557740 PPP1R3AQ16821 1122 aa13.76□□□□□ -0.21
SHMT2-235ENST00000557740 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.76□□□□□ -0.21
SHMT2-235ENST00000557740 H3F3CQ6NXT2 135 aa13.76□□□□□ -0.21
SHMT2-235ENST00000557740 ZC3HC1Q86WB0 502 aaKnown RBP13.76□□□□□ -0.21
SHMT2-235ENST00000557740 CYP4X1Q8N118 509 aa13.76□□□□□ -0.21
SHMT2-235ENST00000557740 SLC34A3Q8N130 599 aa13.76□□□□□ -0.21
SHMT2-235ENST00000557740 FBXO36Q8NEA4 188 aa13.76□□□□□ -0.21
SHMT2-235ENST00000557740 TRPV3Q8NET8 790 aa13.76□□□□□ -0.21
SHMT2-235ENST00000557740 RELTQ969Z4 430 aa13.76□□□□□ -0.21
SHMT2-235ENST00000557740 KLHL1Q9NR64 748 aa13.76□□□□□ -0.21
SHMT2-235ENST00000557740 ANKRD10Q9NXR5 420 aa13.76□□□□□ -0.21
SHMT2-235ENST00000557740 COPG2Q9UBF2 871 aa13.76□□□□□ -0.21
SHMT2-235ENST00000557740 IKZF3Q9UKT9 509 aa13.76□□□□□ -0.21
SHMT2-235ENST00000557740 KCNE2Q9Y6J6 123 aa13.76□□□□□ -0.21
SHMT2-235ENST00000557740 CROCCQ5TZA2 2017 aa13.75□□□□□ -0.21
SHMT2-235ENST00000557740 GABRR3A8MPY1 467 aa13.75□□□□□ -0.21
SHMT2-235ENST00000557740 EFCAB8A8MWE9 144 aa13.75□□□□□ -0.21
SHMT2-235ENST00000557740 CCDC188H7C350 402 aa13.75□□□□□ -0.21
SHMT2-235ENST00000557740 CDC7O00311 574 aa13.75□□□□□ -0.21
SHMT2-235ENST00000557740 NDC80O14777 642 aa13.75□□□□□ -0.21
SHMT2-235ENST00000557740 B4GALT2O60909 372 aa13.75□□□□□ -0.21
SHMT2-235ENST00000557740 MLYCDO95822 493 aa13.75□□□□□ -0.21
SHMT2-235ENST00000557740 B3GALT4O96024 378 aa13.75□□□□□ -0.21
SHMT2-235ENST00000557740 RNH1P13489 461 aaKnown RBP13.75□□□□□ -0.21
SHMT2-235ENST00000557740 CD46P15529 392 aa13.75□□□□□ -0.21
SHMT2-235ENST00000557740 EEF1DP29692 281 aaKnown RBP13.75□□□□□ -0.21
SHMT2-235ENST00000557740 HNF4AP41235 474 aa13.75□□□□□ -0.21
SHMT2-235ENST00000557740 SLC26A5P58743 744 aa13.75□□□□□ -0.21
SHMT2-235ENST00000557740 RAB8AP61006 207 aa13.75□□□□□ -0.21
SHMT2-235ENST00000557740 OC90Q02509 493 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-235ENST00000557740 SRSF11Q05519 484 aaKnown RBP13.75□□□□□ -0.21
SHMT2-235ENST00000557740 ZNF460Q14592 562 aa13.75□□□□□ -0.21
SHMT2-235ENST00000557740 RBBP5Q15291 538 aaKnown RBP13.75□□□□□ -0.21
SHMT2-235ENST00000557740 MTFR2Q6P444 385 aa13.75□□□□□ -0.21
SHMT2-235ENST00000557740 NXPE4Q6UWF7 544 aa13.75□□□□□ -0.21
SHMT2-235ENST00000557740 ADAMTSL2Q86TH1 951 aa13.75□□□□□ -0.21
SHMT2-235ENST00000557740 CREG2Q8IUH2 290 aa13.75□□□□□ -0.21
SHMT2-235ENST00000557740 LGI4Q8N135 537 aa13.75□□□□□ -0.21
SHMT2-235ENST00000557740 HORMAD2Q8N7B1 307 aa13.75□□□□□ -0.21
SHMT2-235ENST00000557740 TMEM178AQ8NBL3 297 aa13.75□□□□□ -0.21
SHMT2-235ENST00000557740 MDS2Q8NDY4 140 aa13.75□□□□□ -0.21
SHMT2-235ENST00000557740 ARMC2Q8NEN0 867 aa13.75□□□□□ -0.21
SHMT2-235ENST00000557740 UTP15Q8TED0 518 aaKnown RBP13.75□□□□□ -0.21
SHMT2-235ENST00000557740 ANKRD7Q92527 254 aa13.75□□□□□ -0.21
SHMT2-235ENST00000557740 MAGED4Q96JG8 741 aa13.75□□□□□ -0.21
SHMT2-235ENST00000557740 PTCHD1Q96NR3 888 aa13.75□□□□□ -0.21
SHMT2-235ENST00000557740 NAPGQ99747 312 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-235ENST00000557740 CLK4Q9HAZ1 481 aaKnown RBP13.75□□□□□ -0.21
SHMT2-235ENST00000557740 NSMCE4AQ9NXX6 385 aa13.75□□□□□ -0.21
SHMT2-235ENST00000557740 CTNNAL1Q9UBT7 734 aa13.75□□□□□ -0.21
SHMT2-235ENST00000557740 SH3BGRL2Q9UJC5 107 aa13.75□□□□□ -0.21
SHMT2-235ENST00000557740 ENTPD4Q9Y227 616 aa13.75□□□□□ -0.21
SHMT2-235ENST00000557740 PCDHGB6Q9Y5F9 930 aa13.75□□□□□ -0.21
SHMT2-235ENST00000557740 SAR1BQ9Y6B6 198 aa13.75□□□□□ -0.21
SHMT2-235ENST00000557740 CPAMD8Q8IZJ3 1885 aa13.75□□□□□ -0.21
SHMT2-235ENST00000557740 ARHGAP10A1A4S6 786 aa13.74□□□□□ -0.21
SHMT2-235ENST00000557740 USP27XA6NNY8 438 aa13.74□□□□□ -0.21
SHMT2-235ENST00000557740 PRSS44E7EML9 344 aa13.74□□□□□ -0.21
SHMT2-235ENST00000557740 FAM227AF5H4B4 570 aa13.74□□□□□ -0.21
SHMT2-235ENST00000557740 CCL21O00585 134 aa13.74□□□□□ -0.21
SHMT2-235ENST00000557740 HNRNPRO43390 633 aaKnown RBP13.74□□□□□ -0.21
SHMT2-235ENST00000557740 MAN1A2O60476 641 aa13.74□□□□□ -0.21
SHMT2-235ENST00000557740 PRMT3O60678 531 aa13.74□□□□□ -0.21
SHMT2-235ENST00000557740 CD96P40200 585 aa13.74□□□□□ -0.21
SHMT2-235ENST00000557740 PAFAH1B1P43034 410 aa13.74□□□□□ -0.21
SHMT2-235ENST00000557740 HNMTP50135 292 aa13.74□□□□□ -0.21
SHMT2-235ENST00000557740 SLC12A2P55011 1212 aa13.74□□□□□ -0.21
SHMT2-235ENST00000557740 CDKL1Q00532 357 aa13.74□□□□□ -0.21
SHMT2-235ENST00000557740 FASTKD3Q14CZ7 662 aaKnown RBP13.74□□□□□ -0.21
SHMT2-235ENST00000557740 TOR1AIP1Q5JTV8 583 aa13.74□□□□□ -0.21
SHMT2-235ENST00000557740 QSOX2Q6ZRP7 698 aa13.74□□□□□ -0.21
SHMT2-235ENST00000557740 ZBED8Q8IZ13 594 aa13.74□□□□□ -0.21
SHMT2-235ENST00000557740 ANKRD53Q8N9V6 530 aa13.74□□□□□ -0.21
SHMT2-235ENST00000557740 FAM98AQ8NCA5 519 aaKnown RBP13.74□□□□□ -0.21
SHMT2-235ENST00000557740 SIGLEC12Q96PQ1 595 aa13.74□□□□□ -0.21
SHMT2-235ENST00000557740 NPAS2Q99743 824 aa13.74□□□□□ -0.21
SHMT2-235ENST00000557740 SLC6A16Q9GZN6 736 aa13.74□□□□□ -0.21
SHMT2-235ENST00000557740 RHBGQ9H310 441 aa13.74□□□□□ -0.21
SHMT2-235ENST00000557740 RHOJQ9H4E5 214 aa13.74□□□□□ -0.21
SHMT2-235ENST00000557740 SLC22A14Q9Y267 594 aa13.74□□□□□ -0.21
SHMT2-235ENST00000557740 OARD1Q9Y530 152 aa13.74□□□□□ -0.21
SHMT2-235ENST00000557740 SCN3AQ9NY46 2000 aa13.73□□□□□ -0.21
SHMT2-235ENST00000557740 SLC19A2O60779 497 aa13.73□□□□□ -0.21
SHMT2-235ENST00000557740 DNAJB6O75190 326 aa13.73□□□□□ -0.21
SHMT2-235ENST00000557740 WDR47O94967 919 aa13.73□□□□□ -0.21
SHMT2-235ENST00000557740 SERPINA6P08185 405 aa13.73□□□□□ -0.21
SHMT2-235ENST00000557740 MAOAP21397 527 aa13.73□□□□□ -0.21
SHMT2-235ENST00000557740 CA7P43166 264 aa13.73□□□□□ -0.21
SHMT2-235ENST00000557740 ST13P50502 369 aaKnown RBP13.73□□□□□ -0.21
SHMT2-235ENST00000557740 TAS2R39P59534 338 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms