RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 TMEM184BQ9Y519 407 aaPredicted RBP12.19□□□□□ -0.46
SHMT2-227ENST00000557269 DNAJC15Q9Y5T4 150 aa12.19□□□□□ -0.46
SHMT2-227ENST00000557269 A0A0A6YYC8 382 aaPredicted RBP12.18□□□□□ -0.46
SHMT2-227ENST00000557269 I3L1I5 382 aaPredicted RBP12.18□□□□□ -0.46
SHMT2-227ENST00000557269 RTCAO00442 366 aaKnown RBP12.18□□□□□ -0.46
SHMT2-227ENST00000557269 TXNDC9O14530 226 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 KLF11O14901 512 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 DSCR3O14972 297 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 ULK1O75385 1050 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 CRCPO75575 148 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 KRT6AP02538 564 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 KRT6BP04259 564 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 JUNP05412 331 aaKnown RBP12.18□□□□□ -0.46
SHMT2-227ENST00000557269 UROSP10746 265 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 IL1RNP18510 177 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 ALAS2P22557 587 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 SERPINB1P30740 379 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 KRT6CP48668 564 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 EMP3P54852 163 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 OCRLQ01968 901 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 GUCY1A3Q02108 690 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 RGS1Q08116 209 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 IFT88Q13099 833 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 FAM214AQ32MH5 1076 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 MANEAQ5SRI9 462 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 DEPDC1Q5TB30 811 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 KHDRBS2Q5VWX1 349 aaKnown RBP12.18□□□□□ -0.46
SHMT2-227ENST00000557269 RHBDD2Q6NTF9 364 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 TRIM42Q8IWZ5 723 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 CLYBLQ8N0X4 340 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 AFAP1L2Q8N4X5 818 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 AMER3Q8N944 861 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 OR9A4Q8NGU2 314 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 RAB3IL1Q8TBN0 382 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 DYDC1Q8WWB3 177 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 GATA6Q92908 595 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 CMTM7Q96FZ5 175 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 GBP5Q96PP8 586 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 SORBS1Q9BX66 1292 aaKnown RBP12.18□□□□□ -0.46
SHMT2-227ENST00000557269 NLNQ9BYT8 704 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 ACPTQ9BZG2 426 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 REXO4Q9GZR2 422 aaKnown RBP12.18□□□□□ -0.46
SHMT2-227ENST00000557269 SLCO1B3Q9NPD5 702 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 LHX9Q9NQ69 397 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 PRDM7Q9NQW5 492 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 SLC22A11Q9NSA0 550 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 THAP1Q9NVV9 213 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 FAM53CQ9NYF3 392 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 NDOR1Q9UHB4 597 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 ADGRE2Q9UHX3 823 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 HAO1Q9UJM8 370 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 ANGPTL2Q9UKU9 493 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 RAP2CQ9Y3L5 183 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 MAU2Q9Y6X3 613 aa12.18□□□□□ -0.46
SHMT2-227ENST00000557269 CACNA1AO00555 2505 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 ZNF860A6NHJ4 632 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 SGK494L7N484 410 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 MEN1O00255 615 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 ERI3O43414 337 aaKnown RBP12.17□□□□□ -0.46
SHMT2-227ENST00000557269 CPNE3O75131 537 aaKnown RBP12.17□□□□□ -0.46
SHMT2-227ENST00000557269 CAPNS1P04632 268 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 PTX3P26022 381 aaPredicted RBP12.17□□□□□ -0.46
SHMT2-227ENST00000557269 OR1D4P47884 311 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 PLA2G16P53816 162 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 ARSFP54793 590 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 GYS2P54840 703 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 HMGCS1Q01581 520 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 SLC9A5Q14940 896 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 TGIF1Q15583 401 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 MUM1Q2TAK8 710 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 TBC1D25Q3MII6 688 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 DEFB134Q4QY38 66 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 YOD1Q5VVQ6 348 aaPredicted RBP12.17□□□□□ -0.46
SHMT2-227ENST00000557269 GARNL3Q5VVW2 1013 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 ATG16L1Q676U5 607 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 ABHD17CQ6PCB6 329 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 FAM199XQ6PEV8 388 aaPredicted RBP12.17□□□□□ -0.46
SHMT2-227ENST00000557269 ERMP1Q7Z2K6 904 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 TMEM151BQ8IW70 566 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 DSELQ8IZU8 1212 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 ARFGAP2Q8N6H7 521 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 OR2L5Q8NG80 312 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 OR2T11Q8NH01 316 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 FAM76AQ8TAV0 307 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 LRRC8CQ8TDW0 803 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 MAGEB18Q96M61 343 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 QRFPRQ96P65 431 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 C17orf62Q9BQA9 187 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 ZNF717Q9BY31 904 aaPredicted RBP12.17□□□□□ -0.46
SHMT2-227ENST00000557269 SLC7A5P2Q9GIP4 190 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 ILKAPQ9H0C8 392 aaPredicted RBP12.17□□□□□ -0.46
SHMT2-227ENST00000557269 PRM3Q9NNZ6 103 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 PSD3Q9NYI0 1048 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 SRPK3Q9UPE1 567 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.17□□□□□ -0.46
SHMT2-227ENST00000557269 NAALAD2Q9Y3Q0 740 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 CCL27Q9Y4X3 112 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 SLC22A7Q9Y694 548 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 SDK2Q58EX2 2172 aa12.17□□□□□ -0.46
SHMT2-227ENST00000557269 WDFY3Q8IZQ1 3526 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms