RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	TCEANC	Q8N8B7	351 aa		4.82	□□□□□ -1.64
SYNE2-223	ENST00000557005	RHEBL1	Q8TAI7	183 aa		4.82	□□□□□ -1.64
SYNE2-223	ENST00000557005	TEX37	Q96LM6	180 aa		4.82	□□□□□ -1.64
SYNE2-223	ENST00000557005	C2orf49	Q9BVC5	232 aa	Predicted RBP	4.82	□□□□□ -1.64
SYNE2-223	ENST00000557005	TPT1P8	Q9HAU6	139 aa		4.82	□□□□□ -1.64
SYNE2-223	ENST00000557005	ACOT13	Q9NPJ3	140 aa		4.82	□□□□□ -1.64
SYNE2-223	ENST00000557005	ENAM	Q9NRM1	1142 aa		4.82	□□□□□ -1.64
SYNE2-223	ENST00000557005	THG1L	Q9NWX6	298 aa	Known RBP	4.82	□□□□□ -1.64
SYNE2-223	ENST00000557005	MGAT4A	Q9UM21	535 aa		4.82	□□□□□ -1.64
SYNE2-223	ENST00000557005	UGT2A1	Q9Y4X1	527 aa		4.82	□□□□□ -1.64
SYNE2-223	ENST00000557005	CORIN	Q9Y5Q5	1042 aa		4.82	□□□□□ -1.64
SYNE2-223	ENST00000557005	USP3	Q9Y6I4	520 aa		4.82	□□□□□ -1.64
SYNE2-223	ENST00000557005	FXYD6-FXYD2	A0A087WZ82	144 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	IGKV6D-21	A0A0A0MT36	114 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005		A0A1W2PPK0	400 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	DAPL1	A0PJW8	107 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	FAM47E-STBD1	D6RA91	191 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	KPNA3	O00505	521 aa	Predicted RBP	4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	WNT9A	O14904	365 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	GRM6	O15303	877 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	OR1F1	O43749	312 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	HPGDS	O60760	199 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	ELFN1	P0C7U0	828 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	BCKDHA	P12694	445 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	EDNRA	P25101	427 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	ACVR2A	P27037	513 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	GATM	P50440	423 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	GP2	P55259	537 aa	Known RBP	4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	POLR2L	P62875	67 aa	Known RBP	4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	SMAD3	P84022	425 aa	Known RBP	4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	GHRHR	Q02643	423 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	SLBP	Q14493	270 aa	Known RBP eCLIP	4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	MAD2L1BP	Q15013	274 aa	Predicted RBP	4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	ZBTB6	Q15916	424 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	UPP1	Q16831	310 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	ADPRM	Q3LIE5	342 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	TMEM220	Q6QAJ8	160 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	ZSWIM9	Q86XI8	627 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	PIAS4	Q8N2W9	510 aa	Predicted RBP	4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	B3GNT7	Q8NFL0	401 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	OR7G1	Q8NGA0	311 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	SGCD	Q92629	289 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	UBE2E3	Q969T4	207 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	NXPE2	Q96DL1	559 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	QRFPR	Q96P65	431 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	HTATIP2	Q9BUP3	242 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	IFT27	Q9BW83	186 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	BRINP2	Q9C0B6	783 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	ZCCHC2	Q9C0B9	1178 aa	Known RBP	4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	FXYD6	Q9H0Q3	95 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	OR51V1	Q9H2C8	321 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	STARD7	Q9NQZ5	370 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	TBC1D24	Q9ULP9	559 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	RUVBL1	Q9Y265	456 aa	Known RBP	4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	TAF1L	Q8IZX4	1826 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005		J3QLW9	94 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	PQBP1	O60828	265 aa	Known RBP	4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	RASGRP1	O95267	797 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	ATP1B2	P14415	290 aa	Predicted RBP	4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	ZNF19	P17023	458 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	LCN1	P31025	176 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	FAM189B	P81408	668 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	PPP2R2B	Q00005	443 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	TGM3	Q08188	693 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	MAP2K5	Q13163	448 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	FRG2	Q64ET8	278 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	CHST9	Q7L1S5	443 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	LYSMD2	Q8IV50	215 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	SLC30A8	Q8IWU4	369 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	CNTN4	Q8IWV2	1026 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	SLC5A8	Q8N695	610 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	SPERT	Q8NA61	448 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	OR4K1	Q8NGD4	311 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	ISL2	Q96A47	359 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	FRG2B	Q96QU4	278 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	MCCC1	Q96RQ3	725 aa	Predicted RBP	4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	EPYC	Q99645	322 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	TRMT61B	Q9BVS5	477 aa	Known RBP	4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	SLC7A5P2	Q9GIP4	190 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	CPNE5	Q9HCH3	593 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	SLC35C2	Q9NQQ7	365 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	MBD2	Q9UBB5	411 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	EXTL2	Q9UBQ6	330 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	MLX	Q9UH92	298 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	ASF1A	Q9Y294	204 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	PCDHGB3	Q9Y5G1	929 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	WNK3	Q9BYP7	1800 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	COL5A3	P25940	1745 aa	Predicted RBP	4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	FAM170B	A6NMN3	283 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	ENTPD6	O75354	484 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	DNAJB5	O75953	348 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	FGB	P02675	491 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	H1F0	P07305	194 aa	Known RBP	4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	KCNE1	P15382	129 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	ITGA3	P26006	1051 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	CDKN2C	P42773	168 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	MAP2K3	P46734	347 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	ZNF81	P51508	661 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	PPP3R1	P63098	170 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	MICA	Q29983	383 aa		4.81	□□□□□ -1.64

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