RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 NPY2RP49146 381 aa9.47□□□□□ -0.89
SCFD1-220ENST00000556486 VSX2P58304 361 aaPredicted RBP9.47□□□□□ -0.89
SCFD1-220ENST00000556486 HSF1Q00613 529 aa9.47□□□□□ -0.89
SCFD1-220ENST00000556486 OCA2Q04671 838 aa9.47□□□□□ -0.89
SCFD1-220ENST00000556486 RBPJQ06330 500 aa9.47□□□□□ -0.89
SCFD1-220ENST00000556486 SIX1Q15475 284 aaPredicted RBP9.47□□□□□ -0.89
SCFD1-220ENST00000556486 CCNG2Q16589 344 aa9.47□□□□□ -0.89
SCFD1-220ENST00000556486 CCSMST1Q4G0I0 132 aa9.47□□□□□ -0.89
SCFD1-220ENST00000556486 CTSL3PQ5NE16 218 aa9.47□□□□□ -0.89
SCFD1-220ENST00000556486 SEL1L2Q5TEA6 688 aa9.47□□□□□ -0.89
SCFD1-220ENST00000556486 GARNL3Q5VVW2 1013 aa9.47□□□□□ -0.89
SCFD1-220ENST00000556486 ZNF425Q6IV72 752 aa9.47□□□□□ -0.89
SCFD1-220ENST00000556486 MRNIPQ6NTE8 343 aa9.47□□□□□ -0.89
SCFD1-220ENST00000556486 HIBCHQ6NVY1 386 aaPredicted RBP9.47□□□□□ -0.89
SCFD1-220ENST00000556486 FBXO42Q6P3S6 717 aa9.47□□□□□ -0.89
SCFD1-220ENST00000556486 NDUFAF7Q7L592 441 aa9.47□□□□□ -0.89
SCFD1-220ENST00000556486 TMEM200AQ86VY9 491 aa9.47□□□□□ -0.89
SCFD1-220ENST00000556486 DMRTC2Q8IXT2 367 aaPredicted RBP9.47□□□□□ -0.89
SCFD1-220ENST00000556486 OR4N4Q8N0Y3 316 aa9.47□□□□□ -0.89
SCFD1-220ENST00000556486 MYO1HQ8N1T3 1032 aa9.47□□□□□ -0.89
SCFD1-220ENST00000556486 CCDC89Q8N998 374 aa9.47□□□□□ -0.89
SCFD1-220ENST00000556486 FBXO15Q8NCQ5 510 aaPredicted RBP9.47□□□□□ -0.89
SCFD1-220ENST00000556486 ADCY4Q8NFM4 1077 aa9.47□□□□□ -0.89
SCFD1-220ENST00000556486 UBASH3BQ8TF42 649 aa9.47□□□□□ -0.89
SCFD1-220ENST00000556486 LPGAT1Q92604 370 aa9.47□□□□□ -0.89
SCFD1-220ENST00000556486 HAS2Q92819 552 aa9.47□□□□□ -0.89
SCFD1-220ENST00000556486 MIEF2Q96C03 454 aa9.47□□□□□ -0.89
SCFD1-220ENST00000556486 FOPNLQ96NB1 174 aa9.47□□□□□ -0.89
SCFD1-220ENST00000556486 MIPEPQ99797 713 aa9.47□□□□□ -0.89
SCFD1-220ENST00000556486 PLCD4Q9BRC7 762 aa9.47□□□□□ -0.89
SCFD1-220ENST00000556486 HES7Q9BYE0 225 aa9.47□□□□□ -0.89
SCFD1-220ENST00000556486 TMPRSS13Q9BYE2 586 aa9.47□□□□□ -0.89
SCFD1-220ENST00000556486 C14orf105Q9NVL8 296 aa9.47□□□□□ -0.89
SCFD1-220ENST00000556486 ABI3Q9P2A4 366 aa9.47□□□□□ -0.89
SCFD1-220ENST00000556486 C3orf18Q9UK00 162 aa9.47□□□□□ -0.89
SCFD1-220ENST00000556486 CDC14AQ9UNH5 594 aa9.47□□□□□ -0.89
SCFD1-220ENST00000556486 DRG1Q9Y295 367 aaKnown RBP9.47□□□□□ -0.89
SCFD1-220ENST00000556486 MRPS2Q9Y399 296 aaKnown RBP9.47□□□□□ -0.89
SCFD1-220ENST00000556486 ABCA2Q9BZC7 2435 aa9.47□□□□□ -0.89
SCFD1-220ENST00000556486 PRRC2AP48634 2157 aaKnown RBP9.47□□□□□ -0.89
SCFD1-220ENST00000556486 IGHV1-45A0A0A0MS14 117 aa9.46□□□□□ -0.9
SCFD1-220ENST00000556486 NSG1A0A0A6YYJ2 146 aa9.46□□□□□ -0.9
SCFD1-220ENST00000556486 IGKV1-8A0A0C4DH67 115 aa9.46□□□□□ -0.9
SCFD1-220ENST00000556486 IDSB3KWA1 339 aa9.46□□□□□ -0.9
SCFD1-220ENST00000556486 NRP2O60462 931 aa9.46□□□□□ -0.9
SCFD1-220ENST00000556486 VPS26AO75436 327 aa9.46□□□□□ -0.9
SCFD1-220ENST00000556486 BMP10O95393 424 aa9.46□□□□□ -0.9
SCFD1-220ENST00000556486 ITGAMP11215 1152 aa9.46□□□□□ -0.9
SCFD1-220ENST00000556486 ETS1P14921 441 aa9.46□□□□□ -0.9
SCFD1-220ENST00000556486 EZRP15311 586 aaKnown RBP9.46□□□□□ -0.9
SCFD1-220ENST00000556486 CMPK1P30085 196 aa9.46□□□□□ -0.9
SCFD1-220ENST00000556486 MAGEA6P43360 314 aa9.46□□□□□ -0.9
SCFD1-220ENST00000556486 BDKRB1P46663 353 aa9.46□□□□□ -0.9
SCFD1-220ENST00000556486 AP2B1P63010 937 aa9.46□□□□□ -0.9
SCFD1-220ENST00000556486 ZNF33BQ06732 778 aa9.46□□□□□ -0.9
SCFD1-220ENST00000556486 FAM53BQ14153 422 aa9.46□□□□□ -0.9
SCFD1-220ENST00000556486 CNSTQ6PJW8 725 aa9.46□□□□□ -0.9
SCFD1-220ENST00000556486 NEK10Q6ZWH5 1172 aa9.46□□□□□ -0.9
SCFD1-220ENST00000556486 PAQR7Q86WK9 346 aa9.46□□□□□ -0.9
SCFD1-220ENST00000556486 AMER3Q8N944 861 aa9.46□□□□□ -0.9
SCFD1-220ENST00000556486 OR9A1PQ8NGU1 263 aa9.46□□□□□ -0.9
SCFD1-220ENST00000556486 C1orf54Q8WWF1 131 aa9.46□□□□□ -0.9
SCFD1-220ENST00000556486 SMPDL3AQ92484 453 aa9.46□□□□□ -0.9
SCFD1-220ENST00000556486 SDCCAG3Q96C92 435 aa9.46□□□□□ -0.9
SCFD1-220ENST00000556486 OR2A5Q96R48 311 aa9.46□□□□□ -0.9
SCFD1-220ENST00000556486 DESI2Q9BSY9 194 aa9.46□□□□□ -0.9
SCFD1-220ENST00000556486 DPH7Q9BTV6 452 aa9.46□□□□□ -0.9
SCFD1-220ENST00000556486 KLHL1Q9NR64 748 aa9.46□□□□□ -0.9
SCFD1-220ENST00000556486 ANKRD10Q9NXR5 420 aa9.46□□□□□ -0.9
SCFD1-220ENST00000556486 BFARQ9NZS9 450 aa9.46□□□□□ -0.9
SCFD1-220ENST00000556486 ZC3H7BQ9UGR2 993 aaKnown RBP9.46□□□□□ -0.9
SCFD1-220ENST00000556486 RUVBL2Q9Y230 463 aaKnown RBP9.46□□□□□ -0.9
SCFD1-220ENST00000556486 MEMO1Q9Y316 297 aa9.46□□□□□ -0.9
SCFD1-220ENST00000556486 HEATR5BQ9P2D3 2071 aa9.46□□□□□ -0.9
SCFD1-220ENST00000556486 A0A0J9YVX5 310 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 KRT87PA6NCN2 255 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 NKX2-6A6NCS4 301 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 ARHGEF33A8MVX0 844 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 NPIPA5E9PKD4 350 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 H0YGG7 62 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 TXNDC9O14530 226 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 PFDN6O15212 129 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 DEAF1O75398 565 aaPredicted RBP9.45□□□□□ -0.9
SCFD1-220ENST00000556486 KCNH1O95259 989 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 ZSCAN5DPP0CG00 497 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 ICAM2P13598 275 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 PKMP14618 531 aaKnown RBP9.45□□□□□ -0.9
SCFD1-220ENST00000556486 KLK2P20151 261 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 TPSB2P20231 275 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 OGNP20774 298 aaKnown RBP9.45□□□□□ -0.9
SCFD1-220ENST00000556486 FBLP22087 321 aaKnown RBP9.45□□□□□ -0.9
SCFD1-220ENST00000556486 NMBRP28336 390 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 IST1P53990 364 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 EIF3BP55884 814 aaKnown RBP9.45□□□□□ -0.9
SCFD1-220ENST00000556486 SESN2P58004 480 aaPredicted RBP9.45□□□□□ -0.9
SCFD1-220ENST00000556486 ARF3P61204 181 aaPredicted RBP9.45□□□□□ -0.9
SCFD1-220ENST00000556486 YBX1P67809 324 aaKnown RBP9.45□□□□□ -0.9
SCFD1-220ENST00000556486 CRADDP78560 199 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 PRDX1Q06830 199 aaKnown RBP9.45□□□□□ -0.9
SCFD1-220ENST00000556486 FASTKQ14296 549 aaKnown RBP9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms