RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 KCTD8Q6ZWB6 473 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 WDR48Q8TAF3 677 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 KLHL25Q9H0H3 589 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 CCDC177Q9NQR7 707 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-212ENST00000554467 SPATA6Q9NWH7 488 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-212ENST00000554467 CUEDC1Q9NWM3 386 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-212ENST00000554467 GPR34Q9UPC5 381 aa11.23□□□□□ -0.61
SHMT2-212ENST00000554467 FRYLO94915 3013 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 PIPSLA2A3N6 862 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 AQP12BA6NM10 295 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 RFXANKO14593 260 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 ASGR2P07307 311 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 ABCB1P08183 1280 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-212ENST00000554467 NTSR1P30989 418 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 HPCAL1P37235 193 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 EIF2DP41214 584 aaKnown RBP11.22□□□□□ -0.61
SHMT2-212ENST00000554467 MC1RQ01726 317 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 MED27Q6P2C8 311 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 TTC23LQ6PF05 361 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 ERMP1Q7Z2K6 904 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 RD3Q7Z3Z2 195 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 PDZD3Q86UT5 571 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 EPHX4Q8IUS5 362 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 AQP12AQ8IXF9 295 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 MMP21Q8N119 569 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 GLB1L3Q8NCI6 653 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-212ENST00000554467 ZNF514Q96K75 400 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-212ENST00000554467 RIPOR3Q96MK2 946 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 ZNF576Q9H609 170 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 GPSM3Q9Y4H4 160 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 PCDHGA3Q9Y5H0 932 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 MUC3AQ02505 3323 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 A0A1W2PQF6 199 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 FEZF1A0PJY2 475 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 H0YIV9 168 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 CLOCKO15516 846 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 ADH1BP00325 375 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 DNTTP04053 509 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 HNF4AP41235 474 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 KIR3DL1P43629 444 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 LAPTM5Q13571 262 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 HTR4Q13639 388 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 ZNF621Q6ZSS3 439 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 ZNF551Q7Z340 670 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-212ENST00000554467 PTRH1Q86Y79 214 aaKnown RBP11.22□□□□□ -0.61
SHMT2-212ENST00000554467 RIMKLAQ8IXN7 391 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 LRRC56Q8IYG6 542 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-212ENST00000554467 LIMD1Q9UGP4 676 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 ANAPC2Q9UJX6 822 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 PCDHGA11Q9Y5H2 935 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 MAGED1Q9Y5V3 778 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-212ENST00000554467 PIAS3Q9Y6X2 628 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 RNGTTO60942 597 aaKnown RBP11.22□□□□□ -0.61
SHMT2-212ENST00000554467 GUCY1B2O75343 617 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 PRPS2P11908 318 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 TGM1P22735 817 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 MYF6P23409 242 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 HTR1EP28566 365 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 TPD52P55327 224 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-212ENST00000554467 ENPP2Q13822 863 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 PPP4R4Q6NUP7 873 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 SLC5A11Q8WWX8 675 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 PANX1Q96RD7 426 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 DPH2Q9BQC3 489 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-212ENST00000554467 ADI1Q9BV57 179 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 CHID1Q9BWS9 393 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 SLC17A9Q9BYT1 436 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 ASIC5Q9NY37 505 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 SH3BP4Q9P0V3 963 aa11.22□□□□□ -0.61
SHMT2-212ENST00000554467 DYTNA2CJ06 578 aa11.21□□□□□ -0.61
SHMT2-212ENST00000554467 POM121BA6NF01 834 aa11.21□□□□□ -0.61
SHMT2-212ENST00000554467 RTCAO00442 366 aaKnown RBP11.21□□□□□ -0.61
SHMT2-212ENST00000554467 PCYT1AP49585 367 aa11.21□□□□□ -0.61
SHMT2-212ENST00000554467 IST1P53990 364 aa11.21□□□□□ -0.61
SHMT2-212ENST00000554467 NKG7Q16617 165 aa11.21□□□□□ -0.61
SHMT2-212ENST00000554467 RUNDC3AQ59EK9 446 aa11.21□□□□□ -0.61
SHMT2-212ENST00000554467 PRAMEF14Q5SWL7 426 aa11.21□□□□□ -0.61
SHMT2-212ENST00000554467 PRAMEF13Q5VWM6 474 aa11.21□□□□□ -0.61
SHMT2-212ENST00000554467 KIAA1324Q6UXG2 1013 aaKnown RBP11.21□□□□□ -0.61
SHMT2-212ENST00000554467 PIWIL3Q7Z3Z3 882 aaKnown RBP11.21□□□□□ -0.61
SHMT2-212ENST00000554467 CHCHD4Q8N4Q1 142 aa11.21□□□□□ -0.61
SHMT2-212ENST00000554467 FRMD1Q8N878 549 aa11.21□□□□□ -0.61
SHMT2-212ENST00000554467 TP53I13Q8NBR0 393 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-212ENST00000554467 OR4K1Q8NGD4 311 aa11.21□□□□□ -0.61
SHMT2-212ENST00000554467 LINC00615Q96LM1 132 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-212ENST00000554467 C12orf66Q96MD2 445 aa11.21□□□□□ -0.61
SHMT2-212ENST00000554467 UHRF1Q96T88 793 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-212ENST00000554467 SGPP1Q9BX95 441 aa11.21□□□□□ -0.61
SHMT2-212ENST00000554467 DPEP2Q9H4A9 486 aa11.21□□□□□ -0.61
SHMT2-212ENST00000554467 ARMC1Q9NVT9 282 aa11.21□□□□□ -0.61
SHMT2-212ENST00000554467 ADGRE2Q9UHX3 823 aa11.21□□□□□ -0.61
SHMT2-212ENST00000554467 VPS4AQ9UN37 437 aa11.21□□□□□ -0.61
SHMT2-212ENST00000554467 TRBV23OR9-2A0A075B6M9 112 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 C17orf113A0A1B0GUU1 675 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 TNFRSF10AO00220 468 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 FPGTO14772 594 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 CLPXO76031 633 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 NTRK1P04629 796 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 SLC35G4P0C7Q5 338 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 C1GALT1C1LP0DN25 315 aa11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms