RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 NEDD8-MDP1E9PL57 170 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 FAM227AF5H4B4 570 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 EIF3FO00303 357 aaPredicted RBP7.21□□□□□ -1.26
LIMA1-213ENST00000552720 DSCR3O14972 297 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 NPC1O15118 1278 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 TBX1O43435 398 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 TLL1O43897 1013 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 C6orf47O95873 294 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 PTHP01270 115 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 DNTTP04053 509 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 URODP06132 367 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 GSTM1P09488 218 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 CTSAP10619 480 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 GTF2E2P29084 291 aaKnown RBP7.21□□□□□ -1.26
LIMA1-213ENST00000552720 SERPINB10P48595 397 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 PTPN5P54829 565 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 SP140Q13342 867 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 TP53BP2Q13625 1128 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 GANABQ14697 944 aaKnown RBP7.21□□□□□ -1.26
LIMA1-213ENST00000552720 EXOC3L2Q2M3D2 409 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 UBE2UQ5VVX9 321 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 TMPRSS11BQ86T26 416 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 MMP21Q8N119 569 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 SLC39A11Q8N1S5 342 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 CPXM2Q8N436 756 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 CPA6Q8N4T0 437 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 RASGEF1AQ8N9B8 481 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 OR10G2Q8NGC3 310 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 OR2A12Q8NGT7 310 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 RHOXF1Q8NHV9 184 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 NFKBIDQ8NI38 313 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 UTP15Q8TED0 518 aaKnown RBP7.21□□□□□ -1.26
LIMA1-213ENST00000552720 CYB5D2Q8WUJ1 264 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 ASZ1Q8WWH4 475 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 MRPS31Q92665 395 aaKnown RBP7.21□□□□□ -1.26
LIMA1-213ENST00000552720 SLC38A4Q969I6 547 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 DACH2Q96NX9 599 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 PKP4Q99569 1192 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 EPYCQ99645 322 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 BCL7BQ9BQE9 202 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 GABARAPL3Q9BY60 117 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 SPNS1Q9H2V7 528 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 FAM83DQ9H4H8 585 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 CCNB1IP1Q9NPC3 277 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 ITM2CQ9NQX7 267 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 ATAD3AQ9NVI7 634 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 HCFC1R1Q9NWW0 138 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 ZNF226Q9NYT6 803 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 KLHL42Q9P2K6 505 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 RHCGQ9UBD6 479 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 PSORS1C1Q9UIG5 152 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 CAB39Q9Y376 341 aaPredicted RBP7.21□□□□□ -1.26
LIMA1-213ENST00000552720 NUP210Q8TEM1 1887 aaPredicted RBP7.2□□□□□ -1.26
LIMA1-213ENST00000552720 SERTM1A2A2V5 107 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 MGAT4DA6NG13 374 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 CLDN24A6NM45 220 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 PCDH17O14917 1159 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 SLC16A5O15375 505 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 PRMT3O60678 531 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 PSIP1O75475 530 aaKnown RBP7.2□□□□□ -1.26
LIMA1-213ENST00000552720 LEFTY1O75610 366 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 SLCO2B1O94956 709 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 POP4O95707 220 aaKnown RBP7.2□□□□□ -1.26
LIMA1-213ENST00000552720 SPNP16150 400 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 ZNF8P17098 575 aaPredicted RBP7.2□□□□□ -1.26
LIMA1-213ENST00000552720 GGT2P36268 569 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 EIF2DP41214 584 aaKnown RBP7.2□□□□□ -1.26
LIMA1-213ENST00000552720 CCR2P41597 374 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 HNRNPFP52597 415 aaKnown RBP7.2□□□□□ -1.26
LIMA1-213ENST00000552720 SELENOWP63302 87 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 FOXK1P85037 733 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 SPIBQ01892 262 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 TIGD6Q17RP2 521 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 MPEG1Q2M385 716 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 TMEM215Q68D42 235 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 GRHL2Q6ISB3 625 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 TTC23LQ6PF05 361 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 GDPD4Q6W3E5 623 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 TMC8Q8IU68 726 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 RASGRP3Q8IV61 690 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 RAVER1Q8IY67 606 aaKnown RBP7.2□□□□□ -1.26
LIMA1-213ENST00000552720 CACTIN-AS1Q8N1I8 211 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 DNAJC22Q8N4W6 341 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 CLP1Q92989 425 aaKnown RBP7.2□□□□□ -1.26
LIMA1-213ENST00000552720 GTPBP3Q969Y2 492 aaKnown RBP7.2□□□□□ -1.26
LIMA1-213ENST00000552720 NRTNQ99748 197 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 TCF25Q9BQ70 676 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 CENPOQ9BU64 300 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 SORBS1Q9BX66 1292 aaKnown RBP7.2□□□□□ -1.26
LIMA1-213ENST00000552720 ROGDIQ9GZN7 287 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 OR51B5Q9H339 312 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 ADPRHL2Q9NX46 363 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 GULP1Q9UBP9 304 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 ZNF229Q9UJW7 825 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 ITM2BQ9Y287 266 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 RBMX2Q9Y388 322 aaKnown RBP7.2□□□□□ -1.26
LIMA1-213ENST00000552720 PCDHGB3Q9Y5G1 929 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 PCDHGA2Q9Y5H1 932 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 HEATR5BQ9P2D3 2071 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 NUMA1Q14980 2115 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms