RNA–Protein interactions for RNA: ENST00000548825.6

PRPF40B-209, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

APPRIS P2 TSL 5 BASIC

Gene PRPF40B, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-209ENST00000548825 XAGE5Q8WWM1 108 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 CCDC115Q96NT0 180 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 PRAP1Q96NZ9 151 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 VPS35Q96QK1 796 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 F2RL3Q96RI0 385 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 ZNF639Q9UID6 485 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 PCDHB11Q9Y5F2 797 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 PCDHGA10Q9Y5H3 936 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 PCDH17O14917 1159 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 SCAMP2O15127 329 aaKnown RBP13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 KDM1AO60341 852 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 PRKRAO75569 313 aaKnown RBP13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 DLGAP3O95886 979 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 BCHEP06276 602 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 IGFBP1P08833 259 aaPredicted RBP13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 C7P10643 843 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 ALOX12P18054 663 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 MAT2AP31153 395 aaKnown RBP13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 SLC6A12P48065 614 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 TMBIM6P55061 237 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 WNT3P56703 355 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 DBPQ10586 325 aaPredicted RBP13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 MOGQ16653 247 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 KIAA1614Q5VZ46 1190 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 SHQ1Q6PI26 577 aaKnown RBP13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 ARMCX6Q7L4S7 300 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 RD3Q7Z3Z2 195 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 TMC8Q8IU68 726 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 EGFL6Q8IUX8 553 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 CRIPAKQ8N1N5 446 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 CBARPQ8N350 705 aaPredicted RBP13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 MCFD2Q8NI22 146 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 CCM2Q9BSQ5 444 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 TM9SF3Q9HD45 589 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 EQTNQ9NQ60 294 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 C8orf4Q9NR00 106 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 SNX11Q9Y5W9 270 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 REV3LO60673 3130 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 EFCAB9A8MZ26 197 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 CLDN25C9JDP6 229 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 CKMT1AP12532 417 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 MYOGP15173 224 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 CD9P21926 228 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 CDH3P22223 829 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 GTF2E2P29084 291 aaKnown RBP13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 PPM1FP49593 454 aaPredicted RBP13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 CRISP3P54108 245 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 MANFP55145 182 aaKnown RBP13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 LIPIQ6XZB0 460 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 DCDC5Q6ZRR9 648 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 ZNF605Q86T29 641 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 TCAIMQ8N3R3 496 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 LZICQ8WZA0 190 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 NXPE3Q969Y0 559 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 KLHL25Q9H0H3 589 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 MARCH7Q9H992 704 aa13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 IMP3Q9NV31 184 aaKnown RBP13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 CAB39Q9Y376 341 aaPredicted RBP13.13□□□□□ -0.31
PRPF40B-209ENST00000548825 ALPK2Q86TB3 2170 aa13.12□□□□□ -0.31
PRPF40B-209ENST00000548825 CLTBP09497 229 aa13.12□□□□□ -0.31
PRPF40B-209ENST00000548825 C8orf89P0DMQ9 161 aa13.12□□□□□ -0.31
PRPF40B-209ENST00000548825 TNNI3P19429 210 aa13.12□□□□□ -0.31
PRPF40B-209ENST00000548825 PTPN6P29350 595 aa13.12□□□□□ -0.31
PRPF40B-209ENST00000548825 MXD1Q05195 221 aa13.12□□□□□ -0.31
PRPF40B-209ENST00000548825 PRSS36Q5K4E3 855 aa13.12□□□□□ -0.31
PRPF40B-209ENST00000548825 PLEKHS1Q5SXH7 462 aa13.12□□□□□ -0.31
PRPF40B-209ENST00000548825 BRAT1Q6PJG6 821 aa13.12□□□□□ -0.31
PRPF40B-209ENST00000548825 HPS1Q92902 700 aa13.12□□□□□ -0.31
PRPF40B-209ENST00000548825 ARMC5Q96C12 935 aa13.12□□□□□ -0.31
PRPF40B-209ENST00000548825 KCNS3Q9BQ31 491 aa13.12□□□□□ -0.31
PRPF40B-209ENST00000548825 IGFLR1Q9H665 355 aa13.12□□□□□ -0.31
PRPF40B-209ENST00000548825 SPTBP11277 2137 aa13.12□□□□□ -0.31
PRPF40B-209ENST00000548825 CACNA1CQ13936 2221 aa13.12□□□□□ -0.31
PRPF40B-209ENST00000548825 KCNE1BA0A087WTH5 132 aa13.12□□□□□ -0.31
PRPF40B-209ENST00000548825 A0A1W2PRB8 838 aa13.12□□□□□ -0.31
PRPF40B-209ENST00000548825 AIREO43918 545 aa13.12□□□□□ -0.31
PRPF40B-209ENST00000548825 EPHX1P07099 455 aa13.12□□□□□ -0.31
PRPF40B-209ENST00000548825 AZGP1P25311 298 aaKnown RBP13.12□□□□□ -0.31
PRPF40B-209ENST00000548825 NRIP1P48552 1158 aa13.12□□□□□ -0.31
PRPF40B-209ENST00000548825 SPATS1Q496A3 300 aa13.12□□□□□ -0.31
PRPF40B-209ENST00000548825 HEATR4Q86WZ0 1026 aa13.12□□□□□ -0.31
PRPF40B-209ENST00000548825 HMG20AQ9NP66 347 aa13.12□□□□□ -0.31
PRPF40B-209ENST00000548825 OR1A2Q9Y585 309 aa13.12□□□□□ -0.31
PRPF40B-209ENST00000548825 SCN2AQ99250 2005 aa13.12□□□□□ -0.31
PRPF40B-209ENST00000548825 SCN3AQ9NY46 2000 aa13.12□□□□□ -0.31
PRPF40B-209ENST00000548825 ASCC3Q8N3C0 2202 aaKnown RBP13.12□□□□□ -0.31
PRPF40B-209ENST00000548825 OR10H3O60404 316 aa13.11□□□□□ -0.31
PRPF40B-209ENST00000548825 SLC7A9P82251 487 aa13.11□□□□□ -0.31
PRPF40B-209ENST00000548825 PPIGQ13427 754 aaKnown RBP eCLIP13.11□□□□□ -0.31
PRPF40B-209ENST00000548825 UBE2J2Q8N2K1 259 aa13.11□□□□□ -0.31
PRPF40B-209ENST00000548825 VN1R2Q8NFZ6 395 aa13.11□□□□□ -0.31
PRPF40B-209ENST00000548825 ATL1Q8WXF7 558 aa13.11□□□□□ -0.31
PRPF40B-209ENST00000548825 LGALS12Q96DT0 336 aa13.11□□□□□ -0.31
PRPF40B-209ENST00000548825 Q96MT0 163 aa13.11□□□□□ -0.31
PRPF40B-209ENST00000548825 ZSCAN5AQ9BUG6 496 aa13.11□□□□□ -0.31
PRPF40B-209ENST00000548825 ANKRA2Q9H9E1 313 aa13.11□□□□□ -0.31
PRPF40B-209ENST00000548825 STOML2Q9UJZ1 356 aa13.11□□□□□ -0.31
PRPF40B-209ENST00000548825 TRBV5-3A0A0A0MS03 114 aa13.11□□□□□ -0.31
PRPF40B-209ENST00000548825 GFYI3L273 518 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms