RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 GTF3C1Q12789 2109 aa15.82■□□□□ 0.12
VPS29-204ENST00000548259 A0A1B0GTL3 188 aa15.82■□□□□ 0.12
VPS29-204ENST00000548259 CTAGE9A4FU28 777 aa15.82■□□□□ 0.12
VPS29-204ENST00000548259 ZNF860A6NHJ4 632 aa15.82■□□□□ 0.12
VPS29-204ENST00000548259 SAGE2PA6NJ88 616 aa15.82■□□□□ 0.12
VPS29-204ENST00000548259 FAM47E-STBD1D6RA91 191 aa15.82■□□□□ 0.12
VPS29-204ENST00000548259 GOLGA8KD6RF30 607 aa15.82■□□□□ 0.12
VPS29-204ENST00000548259 GOLGA8TH3BQL2 631 aa15.82■□□□□ 0.12
VPS29-204ENST00000548259 GFYI3L273 518 aa15.82■□□□□ 0.12
VPS29-204ENST00000548259 B4GALT2O60909 372 aa15.82■□□□□ 0.12
VPS29-204ENST00000548259 PDE9AO76083 593 aa15.82■□□□□ 0.12
VPS29-204ENST00000548259 TUBB4AP04350 444 aa15.82■□□□□ 0.12
VPS29-204ENST00000548259 IMPA1P29218 277 aa15.82■□□□□ 0.12
VPS29-204ENST00000548259 CLCN7P51798 805 aa15.82■□□□□ 0.12
VPS29-204ENST00000548259 TBPL1P62380 186 aa15.82■□□□□ 0.12
VPS29-204ENST00000548259 BASP1P80723 227 aaKnown RBP15.82■□□□□ 0.12
VPS29-204ENST00000548259 PLGLB1Q02325 96 aa15.82■□□□□ 0.12
VPS29-204ENST00000548259 CEBPEQ15744 281 aa15.82■□□□□ 0.12
VPS29-204ENST00000548259 ARMC3Q5W041 872 aa15.82■□□□□ 0.12
VPS29-204ENST00000548259 LRRC8EQ6NSJ5 796 aa15.82■□□□□ 0.12
VPS29-204ENST00000548259 QSOX2Q6ZRP7 698 aa15.82■□□□□ 0.12
VPS29-204ENST00000548259 UBE2R2Q712K3 238 aaPredicted RBP15.82■□□□□ 0.12
VPS29-204ENST00000548259 ABHD13Q7L211 337 aa15.82■□□□□ 0.12
VPS29-204ENST00000548259 PALM2Q8IXS6 379 aa15.82■□□□□ 0.12
VPS29-204ENST00000548259 LRRC56Q8IYG6 542 aaPredicted RBP15.82■□□□□ 0.12
VPS29-204ENST00000548259 PRELID2Q8N945 189 aa15.82■□□□□ 0.12
VPS29-204ENST00000548259 NRGNQ92686 78 aa15.82■□□□□ 0.12
VPS29-204ENST00000548259 MFSD3Q96ES6 412 aa15.82■□□□□ 0.12
VPS29-204ENST00000548259 CCDC138Q96M89 665 aa15.82■□□□□ 0.12
VPS29-204ENST00000548259 CLK4Q9HAZ1 481 aaKnown RBP15.82■□□□□ 0.12
VPS29-204ENST00000548259 PLSCR2Q9NRY7 297 aa15.82■□□□□ 0.12
VPS29-204ENST00000548259 ABCA4P78363 2273 aa15.82■□□□□ 0.12
VPS29-204ENST00000548259 FEZF1A0PJY2 475 aa15.81■□□□□ 0.12
VPS29-204ENST00000548259 OR14I1A6ND48 311 aa15.81■□□□□ 0.12
VPS29-204ENST00000548259 PABPN1LA6NDY0 278 aaKnown RBP15.81■□□□□ 0.12
VPS29-204ENST00000548259 BCKDKO14874 412 aa15.81■□□□□ 0.12
VPS29-204ENST00000548259 CTAG2O75638 210 aa15.81■□□□□ 0.12
VPS29-204ENST00000548259 ALOX12P18054 663 aa15.81■□□□□ 0.12
VPS29-204ENST00000548259 PTMSP20962 102 aa15.81■□□□□ 0.12
VPS29-204ENST00000548259 ARNTP27540 789 aa15.81■□□□□ 0.12
VPS29-204ENST00000548259 COILP38432 576 aaPredicted RBP15.81■□□□□ 0.12
VPS29-204ENST00000548259 CLCN2P51788 898 aa15.81■□□□□ 0.12
VPS29-204ENST00000548259 DGKQP52824 942 aa15.81■□□□□ 0.12
VPS29-204ENST00000548259 NUP107P57740 925 aa15.81■□□□□ 0.12
VPS29-204ENST00000548259 SNRPNP63162 240 aaKnown RBP15.81■□□□□ 0.12
VPS29-204ENST00000548259 CDK16Q00536 496 aa15.81■□□□□ 0.12
VPS29-204ENST00000548259 RGS1Q08116 209 aa15.81■□□□□ 0.12
VPS29-204ENST00000548259 PWP1Q13610 501 aa15.81■□□□□ 0.12
VPS29-204ENST00000548259 KIAA0930Q6ICG6 404 aaPredicted RBP15.81■□□□□ 0.12
VPS29-204ENST00000548259 NEPROQ6NW34 567 aa15.81■□□□□ 0.12
VPS29-204ENST00000548259 ZNF227Q86WZ6 799 aa15.81■□□□□ 0.12
VPS29-204ENST00000548259 CILP2Q8IUL8 1156 aa15.81■□□□□ 0.12
VPS29-204ENST00000548259 ARMC10Q8N2F6 343 aa15.81■□□□□ 0.12
VPS29-204ENST00000548259 MFSD9Q8NBP5 474 aa15.81■□□□□ 0.12
VPS29-204ENST00000548259 GOT1L1Q8NHS2 421 aaPredicted RBP15.81■□□□□ 0.12
VPS29-204ENST00000548259 KCNJ9Q92806 393 aa15.81■□□□□ 0.12
VPS29-204ENST00000548259 LRRC46Q96FV0 321 aa15.81■□□□□ 0.12
VPS29-204ENST00000548259 ALPK1Q96QP1 1244 aa15.81■□□□□ 0.12
VPS29-204ENST00000548259 CCDC77Q9BR77 488 aa15.81■□□□□ 0.12
VPS29-204ENST00000548259 HAUS8Q9BT25 410 aa15.81■□□□□ 0.12
VPS29-204ENST00000548259 GALPQ9UBC7 116 aa15.81■□□□□ 0.12
VPS29-204ENST00000548259 FBXW2Q9UKT8 454 aa15.81■□□□□ 0.12
VPS29-204ENST00000548259 ERVK-11Q9UQG0 969 aa15.81■□□□□ 0.12
VPS29-204ENST00000548259 URADA6NGE7 173 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 NPIPA2E9PIF3 369 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 NPIPA3F8WFD2 350 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 EIF3FO00303 357 aaPredicted RBP15.8■□□□□ 0.12
VPS29-204ENST00000548259 NDUFS4O43181 175 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 CHST10O43529 356 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 GALR3O60755 368 aaPredicted RBP15.8■□□□□ 0.12
VPS29-204ENST00000548259 FTCDO95954 541 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 ETS1P14921 441 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 MGAT1P26572 445 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 ACVR2AP27037 513 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 ZFP36L2P47974 494 aaKnown RBP15.8■□□□□ 0.12
VPS29-204ENST00000548259 SSR4P51571 173 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 CCR8P51685 355 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 GPR85P60893 370 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 SARNPP82979 210 aaKnown RBP15.8■□□□□ 0.12
VPS29-204ENST00000548259 KIF5AQ12840 1032 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 SNX1Q13596 522 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 CUL1Q13616 776 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 THOC5Q13769 683 aaKnown RBP15.8■□□□□ 0.12
VPS29-204ENST00000548259 SLC25A35Q3KQZ1 300 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 GXYLT1Q4G148 440 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 DEFB134Q4QY38 66 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 CES3Q6UWW8 571 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 B3GNT6Q6ZMB0 384 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 CAMKMTQ7Z624 323 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 SLC22A16Q86VW1 577 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 GPALPP1Q8IXQ4 340 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 GPATCH11Q8N954 259 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 OR5T3Q8NGG3 340 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 C1orf54Q8WWF1 131 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 SARGQ9BW04 601 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 TRIM5Q9C035 493 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 LACRTQ9GZZ8 138 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 DEFB127Q9H1M4 99 aa15.8■□□□□ 0.12
VPS29-204ENST00000548259 CLEC4MQ9H2X3 399 aaPredicted RBP15.8■□□□□ 0.12
VPS29-204ENST00000548259 PRDM9Q9NQV7 894 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 102.3 ms