RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 FAM214AQ32MH5 1076 aa15.27■□□□□ 0.04
PRPF40A-212ENST00000545856 C6orf136Q5SQH8 315 aa15.27■□□□□ 0.04
PRPF40A-212ENST00000545856 NUDT13Q86X67 352 aa15.27■□□□□ 0.04
PRPF40A-212ENST00000545856 TTC29Q8NA56 475 aaPredicted RBP15.27■□□□□ 0.04
PRPF40A-212ENST00000545856 CCDC197Q8NCU1 140 aa15.27■□□□□ 0.04
PRPF40A-212ENST00000545856 C11orf24Q96F05 449 aaPredicted RBP15.27■□□□□ 0.04
PRPF40A-212ENST00000545856 RTKNQ9BST9 563 aa15.27■□□□□ 0.04
PRPF40A-212ENST00000545856 B3GNT4Q9C0J1 378 aa15.27■□□□□ 0.04
PRPF40A-212ENST00000545856 REXO4Q9GZR2 422 aaKnown RBP15.27■□□□□ 0.04
PRPF40A-212ENST00000545856 RABEP2Q9H5N1 569 aa15.27■□□□□ 0.04
PRPF40A-212ENST00000545856 FAM60AQ9NP50 221 aa15.27■□□□□ 0.04
PRPF40A-212ENST00000545856 FARSBQ9NSD9 589 aaKnown RBP15.27■□□□□ 0.04
PRPF40A-212ENST00000545856 NOP53Q9NZM5 478 aaKnown RBP15.27■□□□□ 0.04
PRPF40A-212ENST00000545856 TMEM9Q9P0T7 183 aa15.27■□□□□ 0.04
PRPF40A-212ENST00000545856 EIF3LQ9Y262 564 aaKnown RBP15.27■□□□□ 0.04
PRPF40A-212ENST00000545856 KLHL20Q9Y2M5 609 aa15.27■□□□□ 0.04
PRPF40A-212ENST00000545856 SEC16AO15027 2179 aa15.26■□□□□ 0.03
PRPF40A-212ENST00000545856 JUNP05412 331 aaKnown RBP15.26■□□□□ 0.03
PRPF40A-212ENST00000545856 IDO1P14902 403 aa15.26■□□□□ 0.03
PRPF40A-212ENST00000545856 DDX5P17844 614 aaKnown RBP15.26■□□□□ 0.03
PRPF40A-212ENST00000545856 EPHA3P29320 983 aa15.26■□□□□ 0.03
PRPF40A-212ENST00000545856 NEK2P51955 445 aa15.26■□□□□ 0.03
PRPF40A-212ENST00000545856 RAP1GDS1P52306 607 aa15.26■□□□□ 0.03
PRPF40A-212ENST00000545856 ITGA1P56199 1179 aa15.26■□□□□ 0.03
PRPF40A-212ENST00000545856 TRA2BP62995 288 aaKnown RBP15.26■□□□□ 0.03
PRPF40A-212ENST00000545856 TBL3Q12788 808 aaKnown RBP15.26■□□□□ 0.03
PRPF40A-212ENST00000545856 MUM1Q2TAK8 710 aa15.26■□□□□ 0.03
PRPF40A-212ENST00000545856 AP5B1Q2VPB7 878 aa15.26■□□□□ 0.03
PRPF40A-212ENST00000545856 SLC9B1Q4ZJI4 515 aa15.26■□□□□ 0.03
PRPF40A-212ENST00000545856 PHF19Q5T6S3 580 aa15.26■□□□□ 0.03
PRPF40A-212ENST00000545856 TMEM214Q6NUQ4 689 aaKnown RBP15.26■□□□□ 0.03
PRPF40A-212ENST00000545856 TMPRSS9Q7Z410 1059 aa15.26■□□□□ 0.03
PRPF40A-212ENST00000545856 PLD3Q8IV08 490 aa15.26■□□□□ 0.03
PRPF40A-212ENST00000545856 CACNA2D3Q8IZS8 1091 aa15.26■□□□□ 0.03
PRPF40A-212ENST00000545856 ZCCHC7Q8N3Z6 543 aaKnown RBP15.26■□□□□ 0.03
PRPF40A-212ENST00000545856 DEFB124Q8NES8 71 aa15.26■□□□□ 0.03
PRPF40A-212ENST00000545856 RFWD2Q8NHY2 731 aa15.26■□□□□ 0.03
PRPF40A-212ENST00000545856 CHTF18Q8WVB6 975 aa15.26■□□□□ 0.03
PRPF40A-212ENST00000545856 STARD8Q92502 1023 aa15.26■□□□□ 0.03
PRPF40A-212ENST00000545856 MS4A6EQ96DS6 147 aa15.26■□□□□ 0.03
PRPF40A-212ENST00000545856 RILPQ96NA2 401 aa15.26■□□□□ 0.03
PRPF40A-212ENST00000545856 ZPBPQ9BS86 351 aa15.26■□□□□ 0.03
PRPF40A-212ENST00000545856 NPLQ9BXD5 320 aaPredicted RBP15.26■□□□□ 0.03
PRPF40A-212ENST00000545856 AKTIPQ9H8T0 292 aa15.26■□□□□ 0.03
PRPF40A-212ENST00000545856 PRDM9Q9NQV7 894 aa15.26■□□□□ 0.03
PRPF40A-212ENST00000545856 FBXO8Q9NRD0 319 aa15.26■□□□□ 0.03
PRPF40A-212ENST00000545856 FGF21Q9NSA1 209 aa15.26■□□□□ 0.03
PRPF40A-212ENST00000545856 MCM8Q9UJA3 840 aa15.26■□□□□ 0.03
PRPF40A-212ENST00000545856 PRMT3O60678 531 aa15.25■□□□□ 0.03
PRPF40A-212ENST00000545856 GUCY1B2O75343 617 aa15.25■□□□□ 0.03
PRPF40A-212ENST00000545856 TBX6O95947 436 aaPredicted RBP15.25■□□□□ 0.03
PRPF40A-212ENST00000545856 FTH1P19P0C7X4 201 aa15.25■□□□□ 0.03
PRPF40A-212ENST00000545856 ASMTP46597 345 aa15.25■□□□□ 0.03
PRPF40A-212ENST00000545856 SEPHS1P49903 392 aa15.25■□□□□ 0.03
PRPF40A-212ENST00000545856 PDX1P52945 283 aa15.25■□□□□ 0.03
PRPF40A-212ENST00000545856 HYAL2Q12891 473 aa15.25■□□□□ 0.03
PRPF40A-212ENST00000545856 TUBB3Q13509 450 aa15.25■□□□□ 0.03
PRPF40A-212ENST00000545856 KIAA0040Q15053 153 aa15.25■□□□□ 0.03
PRPF40A-212ENST00000545856 ISXQ2M1V0 245 aa15.25■□□□□ 0.03
PRPF40A-212ENST00000545856 LSM12Q3MHD2 195 aaKnown RBP15.25■□□□□ 0.03
PRPF40A-212ENST00000545856 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.25■□□□□ 0.03
PRPF40A-212ENST00000545856 SGO1Q5FBB7 561 aa15.25■□□□□ 0.03
PRPF40A-212ENST00000545856 SPDYAQ5MJ70 313 aa15.25■□□□□ 0.03
PRPF40A-212ENST00000545856 SNAP47Q5SQN1 464 aa15.25■□□□□ 0.03
PRPF40A-212ENST00000545856 WASHC2DQ5SRD0 308 aa15.25■□□□□ 0.03
PRPF40A-212ENST00000545856 FRMPD2BQ6IN97 320 aa15.25■□□□□ 0.03
PRPF40A-212ENST00000545856 ABHD17CQ6PCB6 329 aa15.25■□□□□ 0.03
PRPF40A-212ENST00000545856 IKBIPQ70UQ0 350 aa15.25■□□□□ 0.03
PRPF40A-212ENST00000545856 TMPRSS12Q86WS5 348 aa15.25■□□□□ 0.03
PRPF40A-212ENST00000545856 FNDC5Q8NAU1 212 aa15.25■□□□□ 0.03
PRPF40A-212ENST00000545856 C7orf57Q8NEG2 295 aa15.25■□□□□ 0.03
PRPF40A-212ENST00000545856 OR2T11Q8NH01 316 aa15.25■□□□□ 0.03
PRPF40A-212ENST00000545856 ADAMTS18Q8TE60 1221 aa15.25■□□□□ 0.03
PRPF40A-212ENST00000545856 ZNF501Q96CX3 271 aaPredicted RBP15.25■□□□□ 0.03
PRPF40A-212ENST00000545856 C3orf30Q96M34 536 aa15.25■□□□□ 0.03
PRPF40A-212ENST00000545856 TEFMQ96QE5 360 aaKnown RBP15.25■□□□□ 0.03
PRPF40A-212ENST00000545856 DDX31Q9H8H2 851 aaKnown RBP15.25■□□□□ 0.03
PRPF40A-212ENST00000545856 PRM3Q9NNZ6 103 aa15.25■□□□□ 0.03
PRPF40A-212ENST00000545856 RARRES3Q9UL19 164 aa15.25■□□□□ 0.03
PRPF40A-212ENST00000545856 CLCA2Q9UQC9 943 aa15.25■□□□□ 0.03
PRPF40A-212ENST00000545856 H3BMH7 237 aa15.24■□□□□ 0.03
PRPF40A-212ENST00000545856 UBDO15205 165 aa15.24■□□□□ 0.03
PRPF40A-212ENST00000545856 SEC22BO75396 215 aa15.24■□□□□ 0.03
PRPF40A-212ENST00000545856 OR2B3O76000 313 aa15.24■□□□□ 0.03
PRPF40A-212ENST00000545856 MT-CO3P00414 261 aa15.24■□□□□ 0.03
PRPF40A-212ENST00000545856 TGFB1P01137 390 aa15.24■□□□□ 0.03
PRPF40A-212ENST00000545856 SMIM10L1P0DMW3 83 aa15.24■□□□□ 0.03
PRPF40A-212ENST00000545856 SPTBP11277 2137 aa15.24■□□□□ 0.03
PRPF40A-212ENST00000545856 FGF5P12034 268 aa15.24■□□□□ 0.03
PRPF40A-212ENST00000545856 ALOX12P18054 663 aa15.24■□□□□ 0.03
PRPF40A-212ENST00000545856 TIA1P31483 386 aaKnown RBP eCLIP15.24■□□□□ 0.03
PRPF40A-212ENST00000545856 RPL3P39023 403 aaKnown RBP15.24■□□□□ 0.03
PRPF40A-212ENST00000545856 GCGRP47871 477 aa15.24■□□□□ 0.03
PRPF40A-212ENST00000545856 VSX2P58304 361 aaPredicted RBP15.24■□□□□ 0.03
PRPF40A-212ENST00000545856 STX1BP61266 288 aa15.24■□□□□ 0.03
PRPF40A-212ENST00000545856 CBX1P83916 185 aa15.24■□□□□ 0.03
PRPF40A-212ENST00000545856 HMGCS1Q01581 520 aa15.24■□□□□ 0.03
PRPF40A-212ENST00000545856 VWA5B1Q5TIE3 1220 aa15.24■□□□□ 0.03
PRPF40A-212ENST00000545856 PRMT9Q6P2P2 845 aa15.24■□□□□ 0.03
PRPF40A-212ENST00000545856 KIAA2013Q8IYS2 634 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms