RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 MAGEA12P43365 314 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 BCL2L15Q5TBC7 163 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 ZNF367Q7RTV3 350 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 ZBTB2Q8N680 514 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 CSGALNACT1Q8TDX6 532 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 TANKQ92844 425 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 FUBP1Q96AE4 644 aaKnown RBP13.76□□□□□ -0.21
LIMS1-215ENST00000544547 TEFMQ96QE5 360 aaKnown RBP13.76□□□□□ -0.21
LIMS1-215ENST00000544547 ABCG5Q9H222 651 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 MAB21L2Q9Y586 359 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 LOC102723532A0A0G2JNH3 316 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 CLDN24A6NM45 220 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 SAP18O00422 153 aaKnown RBP13.76□□□□□ -0.21
LIMS1-215ENST00000544547 STX16O14662 325 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 TBL1XO60907 577 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 KCNK2O95069 426 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 TSPAN5P62079 268 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 POU6F2P78424 691 aaPredicted RBP13.76□□□□□ -0.21
LIMS1-215ENST00000544547 C2orf80Q0P641 193 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 PPIGQ13427 754 aaKnown RBP eCLIP13.76□□□□□ -0.21
LIMS1-215ENST00000544547 HEPACAMQ14CZ8 416 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 EXOC3L2Q2M3D2 409 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 SIGIRRQ6IA17 410 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 LAX1Q8IWV1 398 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 ZNF557Q8N988 423 aaPredicted RBP13.76□□□□□ -0.21
LIMS1-215ENST00000544547 DNASE1L2Q92874 299 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 MAP6Q96JE9 813 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 HYLS1Q96M11 299 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 C12orf66Q96MD2 445 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 UROC1Q96N76 676 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 TUBB1Q9H4B7 451 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 NANSQ9NR45 359 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 ENAMQ9NRM1 1142 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 MIOSQ9NXC5 875 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 NDOR1Q9UHB4 597 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 MRPS23Q9Y3D9 190 aaKnown RBP13.76□□□□□ -0.21
LIMS1-215ENST00000544547 HS3ST4Q9Y661 456 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 COL2A1P02458 1487 aaPredicted RBP13.75□□□□□ -0.21
LIMS1-215ENST00000544547 MANBAO00462 879 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 CH25HO95992 272 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 MAPK8P45983 427 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 SRSF11Q05519 484 aaKnown RBP13.75□□□□□ -0.21
LIMS1-215ENST00000544547 NAE1Q13564 534 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 NDUFAF6Q330K2 333 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 ATAT1Q5SQI0 421 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 COL26A1Q96A83 441 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 FBXO8Q9NRD0 319 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 NUP50Q9UKX7 468 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 FLT3LGP49771 235 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 IFITM3Q01628 133 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 SYT6Q5T7P8 510 aaPredicted RBP13.75□□□□□ -0.21
LIMS1-215ENST00000544547 SERPINA13PQ6UXR4 307 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 MBOAT1Q6ZNC8 495 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 CEP68Q76N32 757 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 LACC1Q8IV20 430 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 ZNF433Q8N7K0 673 aaPredicted RBP13.75□□□□□ -0.21
LIMS1-215ENST00000544547 NLGN2Q8NFZ4 835 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 ZBED3Q96IU2 234 aaPredicted RBP13.75□□□□□ -0.21
LIMS1-215ENST00000544547 DOK1Q99704 481 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 ASAH2Q9NR71 780 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 FLRT1Q9NZU1 646 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 HSPE1-MOB4S4R3N1 261 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 A0A0U1RQS6 177 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 WWP2O00308 870 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 FDXRP22570 491 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 PTGER3P43115 390 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 ARCN1P48444 511 aaKnown RBP13.75□□□□□ -0.21
LIMS1-215ENST00000544547 P2RX3P56373 397 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 PRKCDQ05655 676 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 TEAD4Q15561 434 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 AAK1Q2M2I8 961 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 MACC1Q6ZN28 852 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 ZNF598Q86UK7 904 aaKnown RBP13.75□□□□□ -0.21
LIMS1-215ENST00000544547 TMEM80Q96HE8 168 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 MND1Q9BWT6 205 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 SMOC2Q9H3U7 446 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 DNAJC11Q9NVH1 559 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 EXTL2Q9UBQ6 330 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 UBQLN2Q9UHD9 624 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 SARDHQ9UL12 918 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 DHRS7Q9Y394 339 aa13.75□□□□□ -0.21
LIMS1-215ENST00000544547 A0A1B0GVC2 190 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 A6NIN4 97 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 B8ZZF3 427 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 SLC9A3R1O14745 358 aaPredicted RBP13.74□□□□□ -0.21
LIMS1-215ENST00000544547 PTHP01270 115 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 CELP19835 753 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 DAPP51397 102 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 DUSP4Q13115 394 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 SCARB2Q14108 478 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 CLPPQ16740 277 aaPredicted RBP13.74□□□□□ -0.21
LIMS1-215ENST00000544547 DUOXA1Q1HG43 343 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 NADSYN1Q6IA69 706 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 CXXC5Q7LFL8 322 aaKnown RBP13.74□□□□□ -0.21
LIMS1-215ENST00000544547 FAM20CQ8IXL6 584 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 OR9Q2Q8NGE9 314 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 NFKBIDQ8NI38 313 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 TMEM40Q8WWA1 233 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 PAAF1Q9BRP4 392 aa13.74□□□□□ -0.21
LIMS1-215ENST00000544547 FKBP14Q9NWM8 211 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms