RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 TSNARE1Q96NA8 513 aa12.35□□□□□ -0.43
RTN3-213ENST00000543552 OR4K3Q96R72 315 aa12.35□□□□□ -0.43
RTN3-213ENST00000543552 OLFM1Q99784 485 aa12.35□□□□□ -0.43
RTN3-213ENST00000543552 EGFL8Q99944 293 aa12.35□□□□□ -0.43
RTN3-213ENST00000543552 RBCK1Q9BYM8 510 aa12.35□□□□□ -0.43
RTN3-213ENST00000543552 POPDC3Q9HBV1 291 aa12.35□□□□□ -0.43
RTN3-213ENST00000543552 LANCL2Q9NS86 450 aa12.35□□□□□ -0.43
RTN3-213ENST00000543552 SLC17A6Q9P2U8 582 aa12.35□□□□□ -0.43
RTN3-213ENST00000543552 RNF14Q9UBS8 474 aa12.35□□□□□ -0.43
RTN3-213ENST00000543552 SAR1BQ9Y6B6 198 aa12.35□□□□□ -0.43
RTN3-213ENST00000543552 SCN2AQ99250 2005 aa12.34□□□□□ -0.43
RTN3-213ENST00000543552 FAM95CA0A1B0GW59 222 aa12.34□□□□□ -0.43
RTN3-213ENST00000543552 HNRNPRO43390 633 aaKnown RBP12.34□□□□□ -0.43
RTN3-213ENST00000543552 CHST10O43529 356 aa12.34□□□□□ -0.43
RTN3-213ENST00000543552 ZNF888P0CJ79 500 aaPredicted RBP12.34□□□□□ -0.43
RTN3-213ENST00000543552 RNH1P13489 461 aaKnown RBP12.34□□□□□ -0.43
RTN3-213ENST00000543552 GNAZP19086 355 aa12.34□□□□□ -0.43
RTN3-213ENST00000543552 SAT1P21673 171 aa12.34□□□□□ -0.43
RTN3-213ENST00000543552 GSTM2P28161 218 aa12.34□□□□□ -0.43
RTN3-213ENST00000543552 EEF1DP29692 281 aaKnown RBP12.34□□□□□ -0.43
RTN3-213ENST00000543552 SLC26A5P58743 744 aa12.34□□□□□ -0.43
RTN3-213ENST00000543552 STXBP1P61764 594 aaKnown RBP12.34□□□□□ -0.43
RTN3-213ENST00000543552 GNG11P61952 73 aa12.34□□□□□ -0.43
RTN3-213ENST00000543552 SNRPNP63162 240 aaKnown RBP12.34□□□□□ -0.43
RTN3-213ENST00000543552 OC90Q02509 493 aaPredicted RBP12.34□□□□□ -0.43
RTN3-213ENST00000543552 TUBA3CQ13748 450 aa12.34□□□□□ -0.43
RTN3-213ENST00000543552 NAA30Q147X3 362 aaPredicted RBP12.34□□□□□ -0.43
RTN3-213ENST00000543552 PPP1R3AQ16821 1122 aa12.34□□□□□ -0.43
RTN3-213ENST00000543552 CATSPEREQ5SY80 951 aa12.34□□□□□ -0.43
RTN3-213ENST00000543552 TUBA3EQ6PEY2 450 aa12.34□□□□□ -0.43
RTN3-213ENST00000543552 RPTNQ6XPR3 784 aa12.34□□□□□ -0.43
RTN3-213ENST00000543552 QSOX2Q6ZRP7 698 aa12.34□□□□□ -0.43
RTN3-213ENST00000543552 ZC3HC1Q86WB0 502 aaKnown RBP12.34□□□□□ -0.43
RTN3-213ENST00000543552 CRLF3Q8IUI8 442 aa12.34□□□□□ -0.43
RTN3-213ENST00000543552 ANKMY2Q8IV38 441 aa12.34□□□□□ -0.43
RTN3-213ENST00000543552 BBOF1Q8ND07 529 aa12.34□□□□□ -0.43
RTN3-213ENST00000543552 OR5T3Q8NGG3 340 aa12.34□□□□□ -0.43
RTN3-213ENST00000543552 MAGED4Q96JG8 741 aa12.34□□□□□ -0.43
RTN3-213ENST00000543552 NAPGQ99747 312 aaPredicted RBP12.34□□□□□ -0.43
RTN3-213ENST00000543552 PLAC1Q9HBJ0 212 aa12.34□□□□□ -0.43
RTN3-213ENST00000543552 TXNDC16Q9P2K2 825 aa12.34□□□□□ -0.43
RTN3-213ENST00000543552 COPG2Q9UBF2 871 aa12.34□□□□□ -0.43
RTN3-213ENST00000543552 ENTPD4Q9Y227 616 aa12.34□□□□□ -0.43
RTN3-213ENST00000543552 LRBAP50851 2863 aa12.34□□□□□ -0.43
RTN3-213ENST00000543552 A0A088AWK7 358 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 TRGV8A0A0C4DH27 118 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 SYNDIG1LA6NDD5 238 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 NPEPPSL1A6NEC2 478 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 GABRR3A8MPY1 467 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 EFCAB8A8MWE9 144 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 PRMT3O60678 531 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 H2AFYO75367 372 aaKnown RBP12.33□□□□□ -0.44
RTN3-213ENST00000543552 SERPINA6P08185 405 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 ZNF10P21506 573 aaPredicted RBP12.33□□□□□ -0.44
RTN3-213ENST00000543552 PDIA2Q13087 525 aaKnown RBP12.33□□□□□ -0.44
RTN3-213ENST00000543552 RBBP5Q15291 538 aaKnown RBP12.33□□□□□ -0.44
RTN3-213ENST00000543552 OR1C1Q15619 314 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 KRTCAP3Q53RY4 240 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 FCRLBQ6BAA4 426 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 NXPE4Q6UWF7 544 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 CREG2Q8IUH2 290 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 LURAP1LQ8IV03 231 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 MDS2Q8NDY4 140 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 FBXO36Q8NEA4 188 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 UTP15Q8TED0 518 aaKnown RBP12.33□□□□□ -0.44
RTN3-213ENST00000543552 CDKL2Q92772 493 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 TSLPQ969D9 159 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 MOCOSQ96EN8 888 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 TSPAN17Q96FV3 270 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 SEC16BQ96JE7 1060 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 FAR2Q96K12 515 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 PTCHD1Q96NR3 888 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 TRIM51Q9BSJ1 452 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 CAPS2Q9BXY5 557 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 SLC6A16Q9GZN6 736 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 RHOJQ9H4E5 214 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 CNOT10Q9H9A5 744 aaKnown RBP12.33□□□□□ -0.44
RTN3-213ENST00000543552 GPAMQ9HCL2 828 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 PRDM9Q9NQV7 894 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 CTNNAL1Q9UBT7 734 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 SLC22A14Q9Y267 594 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 OARD1Q9Y530 152 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 CREBBPQ92793 2442 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 SCN3AQ9NY46 2000 aa12.33□□□□□ -0.44
RTN3-213ENST00000543552 OR2W5A6NFC9 320 aa12.32□□□□□ -0.44
RTN3-213ENST00000543552 ENO4A6NNW6 628 aa12.32□□□□□ -0.44
RTN3-213ENST00000543552 PRSS44E7EML9 344 aa12.32□□□□□ -0.44
RTN3-213ENST00000543552 CDC7O00311 574 aa12.32□□□□□ -0.44
RTN3-213ENST00000543552 FCHO1O14526 889 aa12.32□□□□□ -0.44
RTN3-213ENST00000543552 B4GALT2O60909 372 aa12.32□□□□□ -0.44
RTN3-213ENST00000543552 CD96P40200 585 aa12.32□□□□□ -0.44
RTN3-213ENST00000543552 CA7P43166 264 aa12.32□□□□□ -0.44
RTN3-213ENST00000543552 RAB8AP61006 207 aa12.32□□□□□ -0.44
RTN3-213ENST00000543552 OLR1P78380 273 aa12.32□□□□□ -0.44
RTN3-213ENST00000543552 ALDH6A1Q02252 535 aaKnown RBP12.32□□□□□ -0.44
RTN3-213ENST00000543552 CALCOCO2Q13137 446 aa12.32□□□□□ -0.44
RTN3-213ENST00000543552 ART3Q13508 389 aa12.32□□□□□ -0.44
RTN3-213ENST00000543552 ZXDCQ2QGD7 858 aaPredicted RBP12.32□□□□□ -0.44
RTN3-213ENST00000543552 TICAM1Q8IUC6 712 aa12.32□□□□□ -0.44
RTN3-213ENST00000543552 ZBED8Q8IZ13 594 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms