RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 SCOCQ9UIL1 159 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 ACSL5Q9ULC5 683 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 DAPP1Q9UN19 280 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 TMEM131Q92545 1883 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 ZNF106Q9H2Y7 1883 aaKnown RBP4.94□□□□□ -1.62
CLIP1-217ENST00000543205 KIR2DS5A0A0G2JLQ3 304 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 A0A0G2JNG1 304 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 A0A1W2PQ09 198 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 TCRBV9S1A1TA0A576 114 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 CPED1A4D0V7 1026 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 OR5K4A6NMS3 321 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 IQCF5A8MTL0 148 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 NUDT19A8MXV4 375 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 KIR2DS3K7RE56 304 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 TAF4O00268 1085 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 LIN7AO14910 233 aaPredicted RBP4.94□□□□□ -1.62
CLIP1-217ENST00000543205 SLC16A6O15403 523 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 ZW10O43264 779 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 SMPD2O60906 423 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 TSPAN9O75954 239 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 APOL3O95236 402 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 F7P08709 466 aaPredicted RBP4.94□□□□□ -1.62
CLIP1-217ENST00000543205 SLC35G4P0C7Q5 338 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 CEACAM1P13688 526 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 F3P13726 295 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 PKMP14618 531 aaKnown RBP4.94□□□□□ -1.62
CLIP1-217ENST00000543205 ENDOUP21128 410 aaKnown RBP4.94□□□□□ -1.62
CLIP1-217ENST00000543205 MCM3P25205 808 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 TNFRSF8P28908 595 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 ARL3P36405 182 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 BCL6P41182 706 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 CD151P48509 253 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 ARFIP2P53365 341 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 GPX6P59796 221 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 RPS3AP61247 264 aaKnown RBP4.94□□□□□ -1.62
CLIP1-217ENST00000543205 AP2B1P63010 937 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 PLOD1Q02809 727 aaPredicted RBP4.94□□□□□ -1.62
CLIP1-217ENST00000543205 KHDRBS1Q07666 443 aaKnown RBP eCLIP4.94□□□□□ -1.62
CLIP1-217ENST00000543205 EPS8Q12929 822 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 DNAJC3Q13217 504 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 BOP1Q14137 746 aaKnown RBP4.94□□□□□ -1.62
CLIP1-217ENST00000543205 KIR2DS5Q14953 304 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 GPR68Q15743 365 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 C14orf28Q4W4Y0 310 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 ZNF789Q5FWF6 425 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 CTSL3PQ5NE16 218 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 ATPAF1Q5TC12 328 aaPredicted RBP4.94□□□□□ -1.62
CLIP1-217ENST00000543205 METRNLQ641Q3 311 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 WASH2PQ6VEQ5 465 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 FAM83HQ6ZRV2 1179 aaPredicted RBP4.94□□□□□ -1.62
CLIP1-217ENST00000543205 CYS1Q717R9 158 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 RNF44Q7L0R7 432 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 OTOAQ7RTW8 1153 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 SLC26A11Q86WA9 606 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 TRIM48Q8IWZ4 208 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 CTAGE3PQ8IX95 158 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 SLC35F3Q8IY50 421 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 NAGSQ8N159 534 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 KRT222Q8N1A0 295 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 GPR156Q8NFN8 814 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 OR6C4Q8NGE1 309 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP4.94□□□□□ -1.62
CLIP1-217ENST00000543205 ZNF75CPQ92670 426 aaPredicted RBP4.94□□□□□ -1.62
CLIP1-217ENST00000543205 TMEM159Q96B96 161 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 CXorf40BQ96DE9 158 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 KTI12Q96EK9 354 aaPredicted RBP4.94□□□□□ -1.62
CLIP1-217ENST00000543205 BIRC8Q96P09 236 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 SLC25A18Q9H1K4 315 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 ANKZF1Q9H8Y5 726 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 COG4Q9H9E3 785 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 SARS2Q9NP81 518 aaKnown RBP4.94□□□□□ -1.62
CLIP1-217ENST00000543205 PNPOQ9NVS9 261 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 NINJ2Q9NZG7 142 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 PSMD13Q9UNM6 376 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 DTNAQ9Y4J8 743 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 ANGPTL3Q9Y5C1 460 aa4.94□□□□□ -1.62
CLIP1-217ENST00000543205 V9GYY5 206 aaPredicted RBP4.94□□□□□ -1.62
CLIP1-217ENST00000543205 KNL1Q8NG31 2342 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 SPAARA0A1B0GVQ0 90 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 TMEM82A0PJX8 343 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 URADA6NGE7 173 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 FAM159BA6NKW6 160 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 NOBOXO60393 691 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 VPS26AO75436 327 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 KCNK5O95279 499 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 ACSL3O95573 720 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 EML2O95834 649 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 VIPP01282 170 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 AHSGP02765 367 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 ACP1P24666 158 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 CCR7P32248 378 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 PMS2P54278 862 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 MAZP56270 477 aaKnown RBP4.93□□□□□ -1.62
CLIP1-217ENST00000543205 SLC26A5P58743 744 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 SIM1P81133 766 aaPredicted RBP4.93□□□□□ -1.62
CLIP1-217ENST00000543205 HSPA14Q0VDF9 509 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 ILF2Q12905 390 aaKnown RBP4.93□□□□□ -1.62
CLIP1-217ENST00000543205 RPA4Q13156 261 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 KRT33BQ14525 404 aa4.93□□□□□ -1.62
CLIP1-217ENST00000543205 ERCC6LQ2NKX8 1250 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms