RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 ABHD11Q8NFV4 315 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 FAM131CQ96AQ9 280 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 RAB11FIP5Q9BXF6 653 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 AMBRA1Q9C0C7 1298 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 THSD1Q9NS62 852 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 ENOPH1Q9UHY7 261 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 FZD4Q9ULV1 537 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 ITM2BQ9Y287 266 aa9.48□□□□□ -0.89
SS18-205ENST00000542420 KMOO15229 486 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 C9P02748 559 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 MT-ND1P03886 318 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 GSNP06396 782 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 ITGA2P17301 1181 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 FCARP24071 287 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 IGFBP5P24593 272 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 SHMT2P34897 504 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 P2RY2P41231 377 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 SLC6A11P48066 632 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 CDH15P55291 814 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 ISL1P61371 349 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 MVKQ03426 396 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 RAB39AQ14964 217 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 PIP5KL1Q5T9C9 394 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 METRNLQ641Q3 311 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 PNCKQ6P2M8 343 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 TMEM184AQ6ZMB5 413 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 COMMD6Q7Z4G1 85 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 TRMT11Q7Z4G4 463 aaKnown RBP9.47□□□□□ -0.89
SS18-205ENST00000542420 HORMAD1Q86X24 394 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 CLVS1Q8IUQ0 354 aaPredicted RBP9.47□□□□□ -0.89
SS18-205ENST00000542420 OFCC1Q8IZS5 231 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 C10orf111Q8N326 155 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 OR5K2Q8NHB8 316 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 C16orf78Q8WTQ4 265 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 RAB2BQ8WUD1 216 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 SH3KBP1Q96B97 665 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 APOL4Q9BPW4 351 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 AIF1LQ9BQI0 150 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 TIMM29Q9BSF4 260 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 DOHHQ9BU89 302 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 TEX101Q9BY14 249 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 RSPH9Q9H1X1 276 aaPredicted RBP9.47□□□□□ -0.89
SS18-205ENST00000542420 MTG2Q9H4K7 406 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 REEP1Q9H902 201 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 GPN2Q9H9Y4 310 aaPredicted RBP9.47□□□□□ -0.89
SS18-205ENST00000542420 PRSS16Q9NQE7 514 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 GNG14A0A1W2PPG7 69 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 ARRDC5A6NEK1 342 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 ADAMDEC1O15204 470 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 SUV39H1O43463 412 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 HS6ST1O60243 411 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 MMP20O60882 483 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 TNFRSF21O75509 655 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 CPSF4O95639 269 aaKnown RBP9.47□□□□□ -0.89
SS18-205ENST00000542420 C5AR1P21730 350 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 OPRD1P41143 372 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 TPD52P55327 224 aaPredicted RBP9.47□□□□□ -0.89
SS18-205ENST00000542420 RAB15P59190 212 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 REEP5Q00765 189 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 SLC14A1Q13336 389 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 CAMK2GQ13555 558 aaPredicted RBP9.47□□□□□ -0.89
SS18-205ENST00000542420 DDX39BQ13838 428 aaKnown RBP9.47□□□□□ -0.89
SS18-205ENST00000542420 CRB2Q5IJ48 1285 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 PPP2R2DQ66LE6 453 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 LILRA3Q8N6C8 439 aaPredicted RBP9.47□□□□□ -0.89
SS18-205ENST00000542420 TTLQ8NG68 377 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 OR4A15Q8NGL6 344 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 SMPDL3AQ92484 453 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 PPCDCQ96CD2 204 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 HSH2DQ96JZ2 352 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 GABARAPL3Q9BY60 117 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 POLR1BQ9H9Y6 1135 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 TPRKBQ9Y3C4 175 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 PCDHGB3Q9Y5G1 929 aa9.47□□□□□ -0.89
SS18-205ENST00000542420 PCNTO95613 3336 aa9.46□□□□□ -0.89
SS18-205ENST00000542420 DOCK8Q8NF50 2099 aa9.46□□□□□ -0.89
SS18-205ENST00000542420 TRPM6Q9BX84 2022 aa9.46□□□□□ -0.89
SS18-205ENST00000542420 BCKDKO14874 412 aa9.46□□□□□ -0.9
SS18-205ENST00000542420 ADAM23O75077 832 aa9.46□□□□□ -0.9
SS18-205ENST00000542420 SEC24DO94855 1032 aaPredicted RBP9.46□□□□□ -0.9
SS18-205ENST00000542420 GSTT2P0CG29 244 aa9.46□□□□□ -0.9
SS18-205ENST00000542420 GSTT2BP0CG30 244 aa9.46□□□□□ -0.9
SS18-205ENST00000542420 PBLDP30039 288 aaPredicted RBP9.46□□□□□ -0.9
SS18-205ENST00000542420 VIPR2P41587 438 aa9.46□□□□□ -0.9
SS18-205ENST00000542420 SELENOWP63302 87 aa9.46□□□□□ -0.9
SS18-205ENST00000542420 CDK3Q00526 305 aa9.46□□□□□ -0.9
SS18-205ENST00000542420 RELAQ04206 551 aa9.46□□□□□ -0.9
SS18-205ENST00000542420 RUNX3Q13761 415 aa9.46□□□□□ -0.9
SS18-205ENST00000542420 MLC1Q15049 377 aa9.46□□□□□ -0.9
SS18-205ENST00000542420 IQCCQ4KMZ1 466 aa9.46□□□□□ -0.9
SS18-205ENST00000542420 GCNT6Q5T4J0 391 aa9.46□□□□□ -0.9
SS18-205ENST00000542420 TMIGD1Q6UXZ0 262 aa9.46□□□□□ -0.9
SS18-205ENST00000542420 TSPYL5Q86VY4 417 aaPredicted RBP9.46□□□□□ -0.9
SS18-205ENST00000542420 C17orf64Q86WR6 236 aa9.46□□□□□ -0.9
SS18-205ENST00000542420 CLECL1Q8IZS7 167 aa9.46□□□□□ -0.9
SS18-205ENST00000542420 OR4K1Q8NGD4 311 aa9.46□□□□□ -0.9
SS18-205ENST00000542420 ASB12Q8WXK4 309 aa9.46□□□□□ -0.9
SS18-205ENST00000542420 MYLIPQ8WY64 445 aa9.46□□□□□ -0.9
SS18-205ENST00000542420 FGF13Q92913 245 aa9.46□□□□□ -0.9
SS18-205ENST00000542420 TMIGD2Q96BF3 282 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms