RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 NPIPB8E9PQR5 432 aa18.03■□□□□ 0.48
TNFRSF1A-213ENST00000540022 SAP18O00422 153 aaKnown RBP18.03■□□□□ 0.48
TNFRSF1A-213ENST00000540022 PEX11AO75192 247 aa18.03■□□□□ 0.48
TNFRSF1A-213ENST00000540022 RSL1D1O76021 490 aaKnown RBP18.03■□□□□ 0.48
TNFRSF1A-213ENST00000540022 SLC35G6P0C7Q6 338 aa18.03■□□□□ 0.48
TNFRSF1A-213ENST00000540022 C1QTNF9P0C862 333 aa18.03■□□□□ 0.48
TNFRSF1A-213ENST00000540022 CCKBRP32239 447 aa18.03■□□□□ 0.48
TNFRSF1A-213ENST00000540022 SNRPNP63162 240 aaKnown RBP18.03■□□□□ 0.48
TNFRSF1A-213ENST00000540022 TUBB3Q13509 450 aa18.03■□□□□ 0.48
TNFRSF1A-213ENST00000540022 CUL3Q13618 768 aa18.03■□□□□ 0.48
TNFRSF1A-213ENST00000540022 WASHC2DQ5SRD0 308 aa18.03■□□□□ 0.48
TNFRSF1A-213ENST00000540022 CSNK1A1LQ8N752 337 aa18.03■□□□□ 0.48
TNFRSF1A-213ENST00000540022 CAMKVQ8NCB2 501 aa18.03■□□□□ 0.48
TNFRSF1A-213ENST00000540022 ACTRT2Q8TDY3 377 aa18.03■□□□□ 0.48
TNFRSF1A-213ENST00000540022 N4BP2L2Q92802 583 aaPredicted RBP18.03■□□□□ 0.48
TNFRSF1A-213ENST00000540022 APIPQ96GX9 242 aa18.03■□□□□ 0.48
TNFRSF1A-213ENST00000540022 TCF7L2Q9NQB0 619 aa18.03■□□□□ 0.48
TNFRSF1A-213ENST00000540022 STARD5Q9NSY2 213 aa18.03■□□□□ 0.48
TNFRSF1A-213ENST00000540022 MSRB2Q9Y3D2 182 aa18.03■□□□□ 0.48
TNFRSF1A-213ENST00000540022 DMXL2Q8TDJ6 3036 aa18.02■□□□□ 0.47
TNFRSF1A-213ENST00000540022 C4orf51C9J302 202 aa18.02■□□□□ 0.47
TNFRSF1A-213ENST00000540022 H3BMH7 237 aa18.02■□□□□ 0.47
TNFRSF1A-213ENST00000540022 MT-CO3P00414 261 aa18.02■□□□□ 0.47
TNFRSF1A-213ENST00000540022 MSL3P1P0C860 447 aa18.02■□□□□ 0.47
TNFRSF1A-213ENST00000540022 PRPH2P23942 346 aa18.02■□□□□ 0.47
TNFRSF1A-213ENST00000540022 RGS1Q08116 209 aa18.02■□□□□ 0.47
TNFRSF1A-213ENST00000540022 TBL3Q12788 808 aaKnown RBP18.02■□□□□ 0.47
TNFRSF1A-213ENST00000540022 COL9A2Q14055 689 aaPredicted RBP18.02■□□□□ 0.47
TNFRSF1A-213ENST00000540022 KIAA0040Q15053 153 aa18.02■□□□□ 0.47
TNFRSF1A-213ENST00000540022 AP5B1Q2VPB7 878 aa18.02■□□□□ 0.47
TNFRSF1A-213ENST00000540022 GALNTL6Q49A17 601 aa18.02■□□□□ 0.47
TNFRSF1A-213ENST00000540022 TOR1AIP1Q5JTV8 583 aa18.02■□□□□ 0.47
TNFRSF1A-213ENST00000540022 SPDYAQ5MJ70 313 aa18.02■□□□□ 0.47
TNFRSF1A-213ENST00000540022 C6orf136Q5SQH8 315 aa18.02■□□□□ 0.47
TNFRSF1A-213ENST00000540022 NXNQ6DKJ4 435 aa18.02■□□□□ 0.47
TNFRSF1A-213ENST00000540022 UNQ6494/PRO21346Q6UXR6 183 aa18.02■□□□□ 0.47
TNFRSF1A-213ENST00000540022 ACAD11Q709F0 780 aa18.02■□□□□ 0.47
TNFRSF1A-213ENST00000540022 CHSY3Q70JA7 882 aa18.02■□□□□ 0.47
TNFRSF1A-213ENST00000540022 CEP70Q8NHQ1 597 aa18.02■□□□□ 0.47
TNFRSF1A-213ENST00000540022 STON2Q8WXE9 905 aa18.02■□□□□ 0.47
TNFRSF1A-213ENST00000540022 MS4A6EQ96DS6 147 aa18.02■□□□□ 0.47
TNFRSF1A-213ENST00000540022 PPP3R2Q96LZ3 170 aa18.02■□□□□ 0.47
TNFRSF1A-213ENST00000540022 CCDC28BQ9BUN5 200 aa18.02■□□□□ 0.47
TNFRSF1A-213ENST00000540022 REXO4Q9GZR2 422 aaKnown RBP18.02■□□□□ 0.47
TNFRSF1A-213ENST00000540022 SPRTNQ9H040 489 aaPredicted RBP18.02■□□□□ 0.47
TNFRSF1A-213ENST00000540022 LRTM1Q9HBL6 345 aa18.02■□□□□ 0.47
TNFRSF1A-213ENST00000540022 FGF21Q9NSA1 209 aa18.02■□□□□ 0.47
TNFRSF1A-213ENST00000540022 C1orf109Q9NX04 203 aa18.02■□□□□ 0.47
TNFRSF1A-213ENST00000540022 SIDT1Q9NXL6 827 aaKnown RBP18.02■□□□□ 0.47
TNFRSF1A-213ENST00000540022 RUVBL1Q9Y265 456 aaKnown RBP18.02■□□□□ 0.47
TNFRSF1A-213ENST00000540022 COL27A1Q8IZC6 1860 aaPredicted RBP18.01■□□□□ 0.47
TNFRSF1A-213ENST00000540022 UNC13CQ8NB66 2214 aa18.01■□□□□ 0.47
TNFRSF1A-213ENST00000540022 TMEM150CB9EJG8 249 aa18.01■□□□□ 0.47
TNFRSF1A-213ENST00000540022 NDUFAB1O14561 156 aa18.01■□□□□ 0.47
TNFRSF1A-213ENST00000540022 VPS4BO75351 444 aa18.01■□□□□ 0.47
TNFRSF1A-213ENST00000540022 CDK4P11802 303 aa18.01■□□□□ 0.47
TNFRSF1A-213ENST00000540022 CSTF2P33240 577 aaKnown RBP eCLIP18.01■□□□□ 0.477e-7■□□□□ 8.4
TNFRSF1A-213ENST00000540022 ISXQ2M1V0 245 aa18.01■□□□□ 0.47
TNFRSF1A-213ENST00000540022 PRTGQ2VWP7 1150 aa18.01■□□□□ 0.47
TNFRSF1A-213ENST00000540022 ATP6AP1LQ52LC2 224 aa18.01■□□□□ 0.47
TNFRSF1A-213ENST00000540022 RFTN2Q52LD8 501 aaPredicted RBP18.01■□□□□ 0.47
TNFRSF1A-213ENST00000540022 HES3Q5TGS1 186 aa18.01■□□□□ 0.47
TNFRSF1A-213ENST00000540022 UBE3DQ7Z6J8 389 aa18.01■□□□□ 0.47
TNFRSF1A-213ENST00000540022 ZNF655Q8N720 491 aaPredicted RBP18.01■□□□□ 0.47
TNFRSF1A-213ENST00000540022 AGBL5Q8NDL9 886 aa18.01■□□□□ 0.47
TNFRSF1A-213ENST00000540022 OR1L3Q8NH93 324 aa18.01■□□□□ 0.47
TNFRSF1A-213ENST00000540022 CHTF18Q8WVB6 975 aa18.01■□□□□ 0.47
TNFRSF1A-213ENST00000540022 ZNF501Q96CX3 271 aaPredicted RBP18.01■□□□□ 0.47
TNFRSF1A-213ENST00000540022 RILPQ96NA2 401 aa18.01■□□□□ 0.47
TNFRSF1A-213ENST00000540022 NMRK1Q9NWW6 199 aa18.01■□□□□ 0.47
TNFRSF1A-213ENST00000540022 OCIAD1Q9NX40 245 aa18.01■□□□□ 0.47
TNFRSF1A-213ENST00000540022 HEATR5BQ9P2D3 2071 aa18.01■□□□□ 0.47
TNFRSF1A-213ENST00000540022 FAM149AA5PLN7 773 aa18■□□□□ 0.47
TNFRSF1A-213ENST00000540022 RTCAO00442 366 aaKnown RBP18■□□□□ 0.47
TNFRSF1A-213ENST00000540022 PLPP1O14494 284 aa18■□□□□ 0.47
TNFRSF1A-213ENST00000540022 SEC22BO75396 215 aa18■□□□□ 0.47
TNFRSF1A-213ENST00000540022 SEMA3DO95025 777 aa18■□□□□ 0.47
TNFRSF1A-213ENST00000540022 LBPP18428 481 aa18■□□□□ 0.47
TNFRSF1A-213ENST00000540022 STXBP1P61764 594 aaKnown RBP18■□□□□ 0.47
TNFRSF1A-213ENST00000540022 ACY1Q03154 408 aa18■□□□□ 0.47
TNFRSF1A-213ENST00000540022 TMEM35AQ53FP2 167 aa18■□□□□ 0.47
TNFRSF1A-213ENST00000540022 TCTE1Q5JU00 501 aa18■□□□□ 0.47
TNFRSF1A-213ENST00000540022 MANEAQ5SRI9 462 aa18■□□□□ 0.47
TNFRSF1A-213ENST00000540022 GKAP1Q5VSY0 366 aaPredicted RBP18■□□□□ 0.47
TNFRSF1A-213ENST00000540022 TMEM198Q66K66 360 aa18■□□□□ 0.47
TNFRSF1A-213ENST00000540022 ZFAND4Q86XD8 727 aa18■□□□□ 0.47
TNFRSF1A-213ENST00000540022 METTL4Q8N3J2 472 aa18■□□□□ 0.47
TNFRSF1A-213ENST00000540022 ARHGEF39Q8N4T4 335 aa18■□□□□ 0.47
TNFRSF1A-213ENST00000540022 C1orf52Q8N6N3 182 aaKnown RBP18■□□□□ 0.47
TNFRSF1A-213ENST00000540022 OR2L5Q8NG80 312 aa18■□□□□ 0.47
TNFRSF1A-213ENST00000540022 C11orf24Q96F05 449 aaPredicted RBP18■□□□□ 0.47
TNFRSF1A-213ENST00000540022 OR6C1Q96RD1 312 aa18■□□□□ 0.47
TNFRSF1A-213ENST00000540022 SORBS1Q9BX66 1292 aaKnown RBP18■□□□□ 0.47
TNFRSF1A-213ENST00000540022 ZNF717Q9BY31 904 aaPredicted RBP18■□□□□ 0.47
TNFRSF1A-213ENST00000540022 LHX9Q9NQ69 397 aa18■□□□□ 0.47
TNFRSF1A-213ENST00000540022 MRPS2Q9Y399 296 aaKnown RBP18■□□□□ 0.47
TNFRSF1A-213ENST00000540022 ACACAQ13085 2346 aa18■□□□□ 0.47
TNFRSF1A-213ENST00000540022 A0A0G2JN53 185 aa17.99■□□□□ 0.47
TNFRSF1A-213ENST00000540022 E9PBE3 544 aa17.99■□□□□ 0.47
TNFRSF1A-213ENST00000540022 ZSCAN9O15535 394 aaPredicted RBP17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms