RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 ADAMTS15Q8TE58 950 aa9.64□□□□□ -0.87
TRAF1-202ENST00000540010 ZSWIM3Q96MP5 696 aa9.64□□□□□ -0.87
TRAF1-202ENST00000540010 BIRC8Q96P09 236 aa9.64□□□□□ -0.87
TRAF1-202ENST00000540010 COL21A1Q96P44 957 aa9.64□□□□□ -0.87
TRAF1-202ENST00000540010 FERD3LQ96RJ6 166 aa9.64□□□□□ -0.87
TRAF1-202ENST00000540010 ITPAQ9BY32 194 aa9.64□□□□□ -0.87
TRAF1-202ENST00000540010 GPSM3Q9Y4H4 160 aa9.64□□□□□ -0.87
TRAF1-202ENST00000540010 ADH1CP00326 375 aa9.64□□□□□ -0.87
TRAF1-202ENST00000540010 FPR1P21462 350 aa9.64□□□□□ -0.87
TRAF1-202ENST00000540010 SLC5A2P31639 672 aa9.64□□□□□ -0.87
TRAF1-202ENST00000540010 CSNK1DP48730 415 aa9.64□□□□□ -0.87
TRAF1-202ENST00000540010 HLCSP50747 726 aa9.64□□□□□ -0.87
TRAF1-202ENST00000540010 NKX2-5P52952 324 aaPredicted RBP9.64□□□□□ -0.87
TRAF1-202ENST00000540010 RGS8P57771 180 aaPredicted RBP9.64□□□□□ -0.87
TRAF1-202ENST00000540010 LGALS3BPQ08380 585 aa9.64□□□□□ -0.87
TRAF1-202ENST00000540010 SLC9A5Q14940 896 aa9.64□□□□□ -0.87
TRAF1-202ENST00000540010 SF1Q15637 639 aaKnown RBP9.64□□□□□ -0.87
TRAF1-202ENST00000540010 ARSIQ5FYB1 569 aa9.64□□□□□ -0.87
TRAF1-202ENST00000540010 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.64□□□□□ -0.87
TRAF1-202ENST00000540010 NEK5Q6P3R8 708 aa9.64□□□□□ -0.87
TRAF1-202ENST00000540010 CRTC1Q6UUV9 634 aa9.64□□□□□ -0.87
TRAF1-202ENST00000540010 NCCRP1Q6ZVX7 275 aaPredicted RBP9.64□□□□□ -0.87
TRAF1-202ENST00000540010 ARMCX6Q7L4S7 300 aa9.64□□□□□ -0.87
TRAF1-202ENST00000540010 CXXC5Q7LFL8 322 aaKnown RBP9.64□□□□□ -0.87
TRAF1-202ENST00000540010 PARGQ86W56 976 aa9.64□□□□□ -0.87
TRAF1-202ENST00000540010 PHC3Q8NDX5 983 aa9.64□□□□□ -0.87
TRAF1-202ENST00000540010 CD200R1Q8TD46 325 aa9.64□□□□□ -0.87
TRAF1-202ENST00000540010 LGALS12Q96DT0 336 aa9.64□□□□□ -0.87
TRAF1-202ENST00000540010 L3HYPDHQ96EM0 354 aa9.64□□□□□ -0.87
TRAF1-202ENST00000540010 UCKL1Q9NWZ5 548 aa9.64□□□□□ -0.87
TRAF1-202ENST00000540010 B4GALT6Q9UBX8 382 aa9.64□□□□□ -0.87
TRAF1-202ENST00000540010 CFL2Q9Y281 166 aa9.64□□□□□ -0.87
TRAF1-202ENST00000540010 A0A1W2PRB8 838 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 C7orf72A4D263 438 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 PENKP01210 267 aaPredicted RBP9.63□□□□□ -0.87
TRAF1-202ENST00000540010 MT-ND2P03891 347 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 PRDX3P30048 256 aaKnown RBP9.63□□□□□ -0.87
TRAF1-202ENST00000540010 VIPR2P41587 438 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 NCS1P62166 190 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 GPR33Q49SQ1 333 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 NIPAL1Q6NVV3 410 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 ENPP6Q6UWR7 440 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 LILRA2Q8N149 483 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 CELF5Q8N6W0 485 aaKnown RBP9.63□□□□□ -0.87
TRAF1-202ENST00000540010 FRS2Q8WU20 508 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 IPCEF1Q8WWN9 437 aaPredicted RBP9.63□□□□□ -0.87
TRAF1-202ENST00000540010 TMCO6Q96DC7 493 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 MRPL48Q96GC5 212 aaKnown RBP9.63□□□□□ -0.87
TRAF1-202ENST00000540010 ATOH8Q96SQ7 321 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 TBX5Q99593 518 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 SLITRK2Q9H156 845 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 OR51V1Q9H2C8 321 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 AASSQ9UDR5 926 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 ERVW-1Q9UQF0 538 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 RNF6Q9Y252 685 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 HS3ST2Q9Y278 367 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 DHRS7Q9Y394 339 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 OR6C70A6NIJ9 312 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 H7C0S8 307 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 MANBAO00462 879 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 CSTF2P33240 577 aaKnown RBP eCLIP9.63□□□□□ -0.87
TRAF1-202ENST00000540010 NRIP1P48552 1158 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 SUOXP51687 545 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 BMXP51813 675 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 BIKQ13323 160 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 RAPSNQ13702 412 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 ABRAXAS2Q15018 415 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 CRB2Q5IJ48 1285 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 ASB18Q6ZVZ8 466 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 GET4Q7L5D6 327 aaPredicted RBP9.63□□□□□ -0.87
TRAF1-202ENST00000540010 FCGR1BQ92637 280 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 SLC38A4Q969I6 547 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 RELTQ969Z4 430 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 FUBP1Q96AE4 644 aaKnown RBP9.63□□□□□ -0.87
TRAF1-202ENST00000540010 SCRN2Q96FV2 425 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 C3orf30Q96M34 536 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 BEX2Q9BXY8 128 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 C14orf119Q9NWQ9 140 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 FBXO10Q9UK96 956 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 SNX7Q9UNH6 387 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 TTC34A8MYJ7 566 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 CCRL2O00421 344 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 APOL3O95236 402 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 CH25HO95992 272 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 VIPP01282 170 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 RB1P06400 928 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 ADH5P11766 374 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 SDC2P34741 201 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 TMBIM6P55061 237 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 SCARB2Q14108 478 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 C18orf21Q32NC0 220 aaPredicted RBP9.63□□□□□ -0.87
TRAF1-202ENST00000540010 GTDC1Q4AE62 458 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 ASTLQ6HA08 431 aaPredicted RBP9.63□□□□□ -0.87
TRAF1-202ENST00000540010 PGM2L1Q6PCE3 622 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 NXPE1Q8N323 547 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 ANKFN1Q8N957 763 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 HDAC2Q92769 488 aaKnown RBP9.63□□□□□ -0.87
TRAF1-202ENST00000540010 OTUB2Q96DC9 234 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 ZNF347Q96SE7 839 aa9.63□□□□□ -0.87
TRAF1-202ENST00000540010 AIF1LQ9BQI0 150 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms