RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 CDKL1Q00532 357 aa12.35□□□□□ -0.43
RTN3-207ENST00000536011 REEP5Q00765 189 aa12.35□□□□□ -0.43
RTN3-207ENST00000536011 USP10Q14694 798 aaKnown RBP12.35□□□□□ -0.43
RTN3-207ENST00000536011 HP1BP3Q5SSJ5 553 aaPredicted RBP12.35□□□□□ -0.43
RTN3-207ENST00000536011 C1QL3Q5VWW1 255 aa12.35□□□□□ -0.43
RTN3-207ENST00000536011 TRMT10BQ6PF06 316 aaKnown RBP12.35□□□□□ -0.43
RTN3-207ENST00000536011 SBSNQ6UWP8 590 aa12.35□□□□□ -0.43
RTN3-207ENST00000536011 TMPRSS11BQ86T26 416 aa12.35□□□□□ -0.43
RTN3-207ENST00000536011 THOC6Q86W42 341 aaKnown RBP12.35□□□□□ -0.43
RTN3-207ENST00000536011 BEST3Q8N1M1 668 aa12.35□□□□□ -0.43
RTN3-207ENST00000536011 TMEM178AQ8NBL3 297 aa12.35□□□□□ -0.43
RTN3-207ENST00000536011 FAM98AQ8NCA5 519 aaKnown RBP12.35□□□□□ -0.43
RTN3-207ENST00000536011 ARMC2Q8NEN0 867 aa12.35□□□□□ -0.43
RTN3-207ENST00000536011 TTLQ8NG68 377 aa12.35□□□□□ -0.43
RTN3-207ENST00000536011 NEIL2Q969S2 332 aa12.35□□□□□ -0.43
RTN3-207ENST00000536011 TSNARE1Q96NA8 513 aa12.35□□□□□ -0.43
RTN3-207ENST00000536011 OR4K3Q96R72 315 aa12.35□□□□□ -0.43
RTN3-207ENST00000536011 OLFM1Q99784 485 aa12.35□□□□□ -0.43
RTN3-207ENST00000536011 EGFL8Q99944 293 aa12.35□□□□□ -0.43
RTN3-207ENST00000536011 RBCK1Q9BYM8 510 aa12.35□□□□□ -0.43
RTN3-207ENST00000536011 POPDC3Q9HBV1 291 aa12.35□□□□□ -0.43
RTN3-207ENST00000536011 LANCL2Q9NS86 450 aa12.35□□□□□ -0.43
RTN3-207ENST00000536011 SLC17A6Q9P2U8 582 aa12.35□□□□□ -0.43
RTN3-207ENST00000536011 RNF14Q9UBS8 474 aa12.35□□□□□ -0.43
RTN3-207ENST00000536011 SAR1BQ9Y6B6 198 aa12.35□□□□□ -0.43
RTN3-207ENST00000536011 SCN2AQ99250 2005 aa12.34□□□□□ -0.43
RTN3-207ENST00000536011 FAM95CA0A1B0GW59 222 aa12.34□□□□□ -0.43
RTN3-207ENST00000536011 HNRNPRO43390 633 aaKnown RBP12.34□□□□□ -0.43
RTN3-207ENST00000536011 CHST10O43529 356 aa12.34□□□□□ -0.43
RTN3-207ENST00000536011 ZNF888P0CJ79 500 aaPredicted RBP12.34□□□□□ -0.43
RTN3-207ENST00000536011 RNH1P13489 461 aaKnown RBP12.34□□□□□ -0.43
RTN3-207ENST00000536011 GNAZP19086 355 aa12.34□□□□□ -0.43
RTN3-207ENST00000536011 SAT1P21673 171 aa12.34□□□□□ -0.43
RTN3-207ENST00000536011 GSTM2P28161 218 aa12.34□□□□□ -0.43
RTN3-207ENST00000536011 EEF1DP29692 281 aaKnown RBP12.34□□□□□ -0.43
RTN3-207ENST00000536011 SLC26A5P58743 744 aa12.34□□□□□ -0.43
RTN3-207ENST00000536011 STXBP1P61764 594 aaKnown RBP12.34□□□□□ -0.43
RTN3-207ENST00000536011 GNG11P61952 73 aa12.34□□□□□ -0.43
RTN3-207ENST00000536011 SNRPNP63162 240 aaKnown RBP12.34□□□□□ -0.43
RTN3-207ENST00000536011 OC90Q02509 493 aaPredicted RBP12.34□□□□□ -0.43
RTN3-207ENST00000536011 TUBA3CQ13748 450 aa12.34□□□□□ -0.43
RTN3-207ENST00000536011 NAA30Q147X3 362 aaPredicted RBP12.34□□□□□ -0.43
RTN3-207ENST00000536011 PPP1R3AQ16821 1122 aa12.34□□□□□ -0.43
RTN3-207ENST00000536011 CATSPEREQ5SY80 951 aa12.34□□□□□ -0.43
RTN3-207ENST00000536011 TUBA3EQ6PEY2 450 aa12.34□□□□□ -0.43
RTN3-207ENST00000536011 RPTNQ6XPR3 784 aa12.34□□□□□ -0.43
RTN3-207ENST00000536011 QSOX2Q6ZRP7 698 aa12.34□□□□□ -0.43
RTN3-207ENST00000536011 ZC3HC1Q86WB0 502 aaKnown RBP12.34□□□□□ -0.43
RTN3-207ENST00000536011 CRLF3Q8IUI8 442 aa12.34□□□□□ -0.43
RTN3-207ENST00000536011 ANKMY2Q8IV38 441 aa12.34□□□□□ -0.43
RTN3-207ENST00000536011 BBOF1Q8ND07 529 aa12.34□□□□□ -0.43
RTN3-207ENST00000536011 OR5T3Q8NGG3 340 aa12.34□□□□□ -0.43
RTN3-207ENST00000536011 MAGED4Q96JG8 741 aa12.34□□□□□ -0.43
RTN3-207ENST00000536011 NAPGQ99747 312 aaPredicted RBP12.34□□□□□ -0.43
RTN3-207ENST00000536011 PLAC1Q9HBJ0 212 aa12.34□□□□□ -0.43
RTN3-207ENST00000536011 TXNDC16Q9P2K2 825 aa12.34□□□□□ -0.43
RTN3-207ENST00000536011 COPG2Q9UBF2 871 aa12.34□□□□□ -0.43
RTN3-207ENST00000536011 ENTPD4Q9Y227 616 aa12.34□□□□□ -0.43
RTN3-207ENST00000536011 LRBAP50851 2863 aa12.34□□□□□ -0.43
RTN3-207ENST00000536011 A0A088AWK7 358 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 TRGV8A0A0C4DH27 118 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 SYNDIG1LA6NDD5 238 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 NPEPPSL1A6NEC2 478 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 GABRR3A8MPY1 467 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 EFCAB8A8MWE9 144 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 PRMT3O60678 531 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 H2AFYO75367 372 aaKnown RBP12.33□□□□□ -0.44
RTN3-207ENST00000536011 SERPINA6P08185 405 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 ZNF10P21506 573 aaPredicted RBP12.33□□□□□ -0.44
RTN3-207ENST00000536011 PDIA2Q13087 525 aaKnown RBP12.33□□□□□ -0.44
RTN3-207ENST00000536011 RBBP5Q15291 538 aaKnown RBP12.33□□□□□ -0.44
RTN3-207ENST00000536011 OR1C1Q15619 314 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 KRTCAP3Q53RY4 240 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 FCRLBQ6BAA4 426 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 NXPE4Q6UWF7 544 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 CREG2Q8IUH2 290 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 LURAP1LQ8IV03 231 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 MDS2Q8NDY4 140 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 FBXO36Q8NEA4 188 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 UTP15Q8TED0 518 aaKnown RBP12.33□□□□□ -0.44
RTN3-207ENST00000536011 CDKL2Q92772 493 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 TSLPQ969D9 159 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 MOCOSQ96EN8 888 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 TSPAN17Q96FV3 270 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 SEC16BQ96JE7 1060 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 FAR2Q96K12 515 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 PTCHD1Q96NR3 888 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 TRIM51Q9BSJ1 452 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 CAPS2Q9BXY5 557 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 SLC6A16Q9GZN6 736 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 RHOJQ9H4E5 214 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 CNOT10Q9H9A5 744 aaKnown RBP12.33□□□□□ -0.44
RTN3-207ENST00000536011 GPAMQ9HCL2 828 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 PRDM9Q9NQV7 894 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 CTNNAL1Q9UBT7 734 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 SLC22A14Q9Y267 594 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 OARD1Q9Y530 152 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 CREBBPQ92793 2442 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 SCN3AQ9NY46 2000 aa12.33□□□□□ -0.44
RTN3-207ENST00000536011 OR2W5A6NFC9 320 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms