RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 OR11G2Q8NGC1 345 aa12.28□□□□□ -0.44
VPS28-216ENST00000533806 OR51Q1Q8NH59 317 aa12.28□□□□□ -0.44
VPS28-216ENST00000533806 ZCCHC10Q8TBK6 192 aa12.28□□□□□ -0.44
VPS28-216ENST00000533806 UBLCP1Q8WVY7 318 aaPredicted RBP12.28□□□□□ -0.44
VPS28-216ENST00000533806 CCDC77Q9BR77 488 aa12.28□□□□□ -0.44
VPS28-216ENST00000533806 CRB3Q9BUF7 120 aa12.28□□□□□ -0.44
VPS28-216ENST00000533806 C1QTNF3Q9BXJ4 246 aa12.28□□□□□ -0.44
VPS28-216ENST00000533806 MRPL46Q9H2W6 279 aaKnown RBP12.28□□□□□ -0.44
VPS28-216ENST00000533806 CLK4Q9HAZ1 481 aaKnown RBP12.28□□□□□ -0.44
VPS28-216ENST00000533806 ANKHQ9HCJ1 492 aa12.28□□□□□ -0.44
VPS28-216ENST00000533806 TMEM216Q9P0N5 145 aa12.28□□□□□ -0.44
VPS28-216ENST00000533806 XPR1Q9UBH6 696 aa12.28□□□□□ -0.44
VPS28-216ENST00000533806 C3orf18Q9UK00 162 aa12.28□□□□□ -0.44
VPS28-216ENST00000533806 TSC22D4Q9Y3Q8 395 aa12.28□□□□□ -0.44
VPS28-216ENST00000533806 PCDHGA9Q9Y5G4 932 aaKnown RBP12.28□□□□□ -0.44
VPS28-216ENST00000533806 TNPO3Q9Y5L0 923 aaKnown RBP12.28□□□□□ -0.44
VPS28-216ENST00000533806 LOC102723996A0A087X1L8 192 aa12.27□□□□□ -0.45
VPS28-216ENST00000533806 A0A1W2PPM1 405 aa12.27□□□□□ -0.45
VPS28-216ENST00000533806 FOXO6A8MYZ6 492 aa12.27□□□□□ -0.45
VPS28-216ENST00000533806 STX16-NPEPL1H3BU86 382 aa12.27□□□□□ -0.45
VPS28-216ENST00000533806 STX16O14662 325 aa12.27□□□□□ -0.45
VPS28-216ENST00000533806 RDH16O75452 317 aa12.27□□□□□ -0.45
VPS28-216ENST00000533806 JRKO75564 520 aa12.27□□□□□ -0.45
VPS28-216ENST00000533806 B3GALT4O96024 378 aa12.27□□□□□ -0.45
VPS28-216ENST00000533806 PDGFAP04085 211 aa12.27□□□□□ -0.45
VPS28-216ENST00000533806 CYC1P08574 325 aa12.27□□□□□ -0.45
VPS28-216ENST00000533806 NUDT17P0C025 328 aa12.27□□□□□ -0.45
VPS28-216ENST00000533806 ZNF888P0CJ79 500 aaPredicted RBP12.27□□□□□ -0.45
VPS28-216ENST00000533806 GFAPP14136 432 aa12.27□□□□□ -0.45
VPS28-216ENST00000533806 HNRNPH1P31943 449 aaKnown RBP12.27□□□□□ -0.45
VPS28-216ENST00000533806 RRADP55042 308 aa12.27□□□□□ -0.45
VPS28-216ENST00000533806 IRF8Q02556 426 aa12.27□□□□□ -0.45
VPS28-216ENST00000533806 LAPTM5Q13571 262 aa12.27□□□□□ -0.45
VPS28-216ENST00000533806 ERCC6LQ2NKX8 1250 aa12.27□□□□□ -0.45
VPS28-216ENST00000533806 DEFB134Q4QY38 66 aa12.27□□□□□ -0.45
VPS28-216ENST00000533806 TMEM205Q6UW68 189 aa12.27□□□□□ -0.45
VPS28-216ENST00000533806 OR5T3Q8NGG3 340 aa12.27□□□□□ -0.45
VPS28-216ENST00000533806 CAVIN3Q969G5 261 aa12.27□□□□□ -0.45
VPS28-216ENST00000533806 MS4A6EQ96DS6 147 aa12.27□□□□□ -0.45
VPS28-216ENST00000533806 ZBTB26Q9HCK0 441 aa12.27□□□□□ -0.45
VPS28-216ENST00000533806 LANCL2Q9NS86 450 aa12.27□□□□□ -0.45
VPS28-216ENST00000533806 CPSF2Q9P2I0 782 aaKnown RBP12.27□□□□□ -0.45
VPS28-216ENST00000533806 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.27□□□□□ -0.45
VPS28-216ENST00000533806 RAB21Q9UL25 225 aa12.27□□□□□ -0.45
VPS28-216ENST00000533806 TMCO1Q9UM00 188 aa12.27□□□□□ -0.45
VPS28-216ENST00000533806 V9GYY5 206 aaPredicted RBP12.27□□□□□ -0.45
VPS28-216ENST00000533806 COL6A6A6NMZ7 2263 aa12.27□□□□□ -0.45
VPS28-216ENST00000533806 MKRN2OSH3BPM6 223 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 MASP2O00187 686 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 PEX12O00623 359 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 OR7A17O14581 309 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 PCDH17O14917 1159 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 UGDHO60701 494 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 SERPIND1P05546 499 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 GSTA1P08263 222 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 PYGBP11216 843 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 IL10P22301 178 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 CCL11P51671 97 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 EMP2P54851 167 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 RAB8AP61006 207 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 GTF2H2Q13888 395 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 PAGE2BQ5JRK9 111 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 LIPJQ5W064 366 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 GRHL2Q6ISB3 625 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 NIPAL1Q6NVV3 410 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 GTF2H2CQ6P1K8 395 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 EMBQ6PCB8 327 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 ABHD13Q7L211 337 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 GOLGA7Q7Z5G4 137 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 UBE3DQ7Z6J8 389 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 PRSS58Q8IYP2 241 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 PTGR2Q8N8N7 351 aaPredicted RBP12.26□□□□□ -0.45
VPS28-216ENST00000533806 L3MBTL4Q8NA19 623 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 OR7G3Q8NG95 312 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 C9orf43Q8TAL5 461 aaPredicted RBP12.26□□□□□ -0.45
VPS28-216ENST00000533806 ZNF473Q8WTR7 871 aaKnown RBP12.26□□□□□ -0.45
VPS28-216ENST00000533806 PHF21BQ96EK2 531 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 FER1L6-AS2Q96M78 137 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 QRFPRQ96P65 431 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 PARD6BQ9BYG5 372 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 VN1R1Q9GZP7 353 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 IPPKQ9H8X2 491 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 ACSS2Q9NR19 701 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 HCN3Q9P1Z3 774 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 TBK1Q9UHD2 729 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 FBXL4Q9UKA2 621 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 PCTPQ9UKL6 214 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 EMCNQ9ULC0 261 aa12.26□□□□□ -0.45
VPS28-216ENST00000533806 SPENQ96T58 3664 aaKnown RBP12.25□□□□□ -0.45
VPS28-216ENST00000533806 MED13Q9UHV7 2174 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 OR2W5A6NFC9 320 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 URADA6NGE7 173 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 ZNF860A6NHJ4 632 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 ANKDD1BA6NHY2 528 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 A8MT66 165 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 B8ZZF3 427 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 H0YIV9 168 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 GOLGA8RI6L899 631 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 CHST10O43529 356 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 RPS17P08708 135 aaKnown RBP12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms