RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 CPT2P23786 658 aa3.62□□□□□ -1.83
CD44-235ENST00000532339 MARK3P27448 753 aa3.62□□□□□ -1.83
CD44-235ENST00000532339 EEF1DP29692 281 aaKnown RBP3.62□□□□□ -1.83
CD44-235ENST00000532339 CDKN1AP38936 164 aa3.62□□□□□ -1.83
CD44-235ENST00000532339 PRCPP42785 496 aa3.62□□□□□ -1.83
CD44-235ENST00000532339 ZNF41P51814 821 aaPredicted RBP3.62□□□□□ -1.83
CD44-235ENST00000532339 TERF1P54274 439 aa3.62□□□□□ -1.83
CD44-235ENST00000532339 SEC61BP60468 96 aaKnown RBP3.62□□□□□ -1.83
CD44-235ENST00000532339 SNTB1Q13884 538 aaKnown RBP3.62□□□□□ -1.83
CD44-235ENST00000532339 IL11RAQ14626 422 aa3.62□□□□□ -1.83
CD44-235ENST00000532339 PNLIPRP3Q17RR3 467 aa3.62□□□□□ -1.83
CD44-235ENST00000532339 EIF2S3LQ2VIR3 472 aaKnown RBP3.62□□□□□ -1.83
CD44-235ENST00000532339 ITPRIPL2Q3MIP1 535 aa3.62□□□□□ -1.83
CD44-235ENST00000532339 ZNF805Q5CZA5 627 aa3.62□□□□□ -1.83
CD44-235ENST00000532339 IGSF11Q5DX21 431 aa3.62□□□□□ -1.83
CD44-235ENST00000532339 TCP11X2Q5H9J9 407 aa3.62□□□□□ -1.83
CD44-235ENST00000532339 GGNBP1Q5YKI7 109 aa3.62□□□□□ -1.83
CD44-235ENST00000532339 METTL2BQ6P1Q9 378 aaKnown RBP3.62□□□□□ -1.83
CD44-235ENST00000532339 HIST3H2AQ7L7L0 130 aa3.62□□□□□ -1.83
CD44-235ENST00000532339 SLC26A9Q7LBE3 791 aa3.62□□□□□ -1.83
CD44-235ENST00000532339 SLFN11Q7Z7L1 901 aa3.62□□□□□ -1.83
CD44-235ENST00000532339 SDCCAG8Q86SQ7 713 aaPredicted RBP3.62□□□□□ -1.83
CD44-235ENST00000532339 EPHX4Q8IUS5 362 aa3.62□□□□□ -1.83
CD44-235ENST00000532339 FAM114A1Q8IWE2 563 aa3.62□□□□□ -1.83
CD44-235ENST00000532339 DSELQ8IZU8 1212 aa3.62□□□□□ -1.83
CD44-235ENST00000532339 METTL27Q8N6F8 245 aaPredicted RBP3.62□□□□□ -1.83
CD44-235ENST00000532339 VPS33AQ96AX1 596 aa3.62□□□□□ -1.83
CD44-235ENST00000532339 METTL2AQ96IZ6 378 aaKnown RBP3.62□□□□□ -1.83
CD44-235ENST00000532339 P2RY13Q9BPV8 354 aa3.62□□□□□ -1.83
CD44-235ENST00000532339 EDEM3Q9BZQ6 932 aa3.62□□□□□ -1.83
CD44-235ENST00000532339 GPR88Q9GZN0 384 aa3.62□□□□□ -1.83
CD44-235ENST00000532339 ERVMER34-1Q9H9K5 563 aa3.62□□□□□ -1.83
CD44-235ENST00000532339 EPB41L5Q9HCM4 733 aa3.62□□□□□ -1.83
CD44-235ENST00000532339 MMP25Q9NPA2 562 aa3.62□□□□□ -1.83
CD44-235ENST00000532339 CNGB3Q9NQW8 809 aa3.62□□□□□ -1.83
CD44-235ENST00000532339 ACSS1Q9NUB1 689 aaPredicted RBP3.62□□□□□ -1.83
CD44-235ENST00000532339 ABCF3Q9NUQ8 709 aa3.62□□□□□ -1.83
CD44-235ENST00000532339 MARCH5Q9NX47 278 aa3.62□□□□□ -1.83
CD44-235ENST00000532339 CRNNQ9UBG3 495 aaPredicted RBP3.62□□□□□ -1.83
CD44-235ENST00000532339 RCOR1Q9UKL0 485 aa3.62□□□□□ -1.83
CD44-235ENST00000532339 PPIEQ9UNP9 301 aaKnown RBP3.62□□□□□ -1.83
CD44-235ENST00000532339 CCL27Q9Y4X3 112 aa3.62□□□□□ -1.83
CD44-235ENST00000532339 CUBNO60494 3623 aa3.62□□□□□ -1.83
CD44-235ENST00000532339 LRRK1Q38SD2 2015 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 TRBC2A0A5B9 178 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 ASPDHA6ND91 283 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 URADA6NGE7 173 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 A6NL46 340 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 SMAD9O15198 467 aaKnown RBP3.61□□□□□ -1.83
CD44-235ENST00000532339 GPC4O75487 556 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 DDHD2O94830 711 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 TPOP07202 933 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 KRT7P08729 469 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 CFC1BP0CG36 223 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 CFC1P0CG37 223 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 PRLRP16471 622 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 DDX5P17844 614 aaKnown RBP3.61□□□□□ -1.83
CD44-235ENST00000532339 TCF7P36402 384 aaPredicted RBP3.61□□□□□ -1.83
CD44-235ENST00000532339 RAD23BP54727 409 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 RELQ04864 619 aaPredicted RBP3.61□□□□□ -1.83
CD44-235ENST00000532339 SLC20A2Q08357 652 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 ILKQ13418 452 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 ALCAMQ13740 583 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 CTF1Q16619 201 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 HLA-BQ31612 363 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 HECTD3Q5T447 861 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 PLA2G4FQ68DD2 849 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 FAM47EQ6ZV65 393 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 SLC9B2Q86UD5 537 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 FOXRED2Q8IWF2 684 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 KLHDC8BQ8IXV7 354 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 GUF1Q8N442 669 aaKnown RBP3.61□□□□□ -1.83
CD44-235ENST00000532339 DMBX1Q8NFW5 382 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 URGCPQ8TCY9 931 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 MOAP1Q96BY2 351 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 CCDC106Q9BWC9 280 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 ST6GALNAC4Q9H4F1 302 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 DENND2DQ9H6A0 471 aaPredicted RBP3.61□□□□□ -1.83
CD44-235ENST00000532339 MAGIXQ9H6Y5 334 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 SEBOXQ9HB31 216 aaPredicted RBP3.61□□□□□ -1.83
CD44-235ENST00000532339 ASCL3Q9NQ33 180 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 KLHL1Q9NR64 748 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 MRGBPQ9NV56 204 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 OR14J1Q9UGF5 321 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 ACSL5Q9ULC5 683 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 ZNF148Q9UQR1 794 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 HELZP42694 1942 aaKnown RBP3.61□□□□□ -1.83
CD44-235ENST00000532339 TACC2O95359 2948 aa3.61□□□□□ -1.83
CD44-235ENST00000532339 BIRC6Q9NR09 4857 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 TCRBV21S2A2A0A5A6 115 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 GOLGA6L9A6NEM1 432 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 MAGEB17A8MXT2 336 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 M0QZ24 198 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 EDIL3O43854 480 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 LDLRP01130 860 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 QDPRP09417 244 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 CDH1P12830 882 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 CSTF2P33240 577 aaKnown RBP eCLIP3.6□□□□□ -1.83
CD44-235ENST00000532339 USP8P40818 1118 aa3.6□□□□□ -1.83
CD44-235ENST00000532339 MSH2P43246 934 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms